| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
Click here to switch to the map view.
The map label for this gene is yoaE [H]
Identifier: 194734512
GI number: 194734512
Start: 1904513
End: 1906072
Strand: Reverse
Name: yoaE [H]
Synonym: SeSA_A1972
Alternate gene names: 194734512
Gene position: 1906072-1904513 (Counterclockwise)
Preceding gene: 194734932
Following gene: 194735776
Centisome position: 40.48
GC content: 55.96
Gene sequence:
>1560_bases ATGGAATTATTAATGGATCCCTCAATTTGGGTGGGTTTACTCACGCTCGTCGTCCTGGAAATTGTCCTGGGTATCGATAA CCTGGTCTTTATCGCGATCCTCGCCGATAAATTGCCGCCAAAGCAGCGTGACAAAGCGCGTCTTATCGGGCTCTCGCTGG CGCTGATTATGCGTCTGGCGCTGCTGTCCATTATTTCGTGGCTGGTGACCTTAACAAAGCCACTCTTTACCGTCTGGGAT TTTACCTTCTCCGGCCGCGATTTAATTATGCTGCTGGGCGGTATATTCCTGCTGTTTAAAGCGACCACCGAGCTGCATGA ACGTCTGGAAAACCGCGAGCATGACACCGGACACGGTAAAGGCTATGCGAGCTTCTGGGTGGTAGTCACGCAGATTGTCA TCCTGGATGCGGTCTTCTCGCTGGACGCCGTGATTACGGCGGTAGGTATGGTAAACCATCTGCCGGTTATGATGGCGGCG GTGGTGATTGCGATGGCGGTGATGCTACTGGCGTCAAAACCGCTGACCCGTTTTGTCAACCAGCATCCGACGGTGGTGGT GCTCTGTCTGAGCTTCCTGCTGATGATCGGCCTGAGCCTGGTGGCGGAAGGGTTTGGTTTCCATATTCCGAAAGGCTACC TGTACGCGGCAATTGGTTTCTCGATCGTTATCGAGGTGTTTAACCAGATTGCGCGCCGCAACTTTATTCGTCATCAGTCC ACGTTGCCGCTGCGCGCGCGTACTGCGGACGCTATCCTGCGTCTGATGGGCGGTAAACGTCAGGCGAGTACACAACATGA GACGGATAGCCCGGCCGCGATATCGGTGTCGGAAGGCGCCTTCGCCGAAGAAGAACGCTACATGATTAACGGCGTACTGA CTCTGGCGTCGCGCTCCCTGCGCGGCATTATGACGCCGCGAGGCGAAATTAGTTGGGTGGATGCGAATCTCAGCGTAGCT GAAATCCGTCAGCAGTTACTCTCTTCTCCGCATAGCCTGTTCCCGGTATGTCGGGGCGAGCTGGATGAAATTATCGGTAT CGTTCGCGCGAAAGAGTTGCTGGTGGCGCTGGAAGAGGGCGCGGACGTTGCGGCTATCGCCGCGTCTTCCCCGGCGATAG TGGTGCCGGAAACGCTTGATCCTATCAATCTGTTAGGCGTTTTGCGTCGTGCGCGCGGCAGTTTCGTTATCGTCACTAAC GAGTTCGGCGTGGTGCAGGGGCTGGTTACGCCGCTGGATGTGCTGGAAGCGATTGCCGGTGAGTTCCCGGATGCCGATGA AACGCCGGAAATCGTTGCCGATGCCGAGGGCTGGATAGTGAAGGGCGGCACCGATCTCCATGCGCTACAGCAGGCGCTGG AAGTTGACCATCTGGTGAACGAAGAGGGCGATATTGCGACGGTCGCGGGGTTAGTGATCGCCGCTAATGGCCATATTCCT CGTGTTGGCGATGTCATTGATGTTCCGCCCCTGCGGATCACCATTGTCGAGGCCAACGACTATCGTGTCGATCTGGTTCG GATTGTTAAAGAACAGCCTGCCCACGACGAAGAGGAATAA
Upstream 100 bases:
>100_bases GCATATCTTGCCATAGCCTTACTTTGTTTATTGCGTTACCGCCTGCATCCTTTGAGATGTTGTGGGCGCCGTTTAGTCAT TCCTTAAGCAGGAGCTTGTC
Downstream 100 bases:
>100_bases CGTCACACGCAGGAACCAAGTCTATAGATGCGGCATCGCGGACATAATCTGTCCGTTATGCCGGGCGGGCGGCGGCGCGC TGCCCGCCAGCCACTGTGGA
Product: membrane protein, TerC family/CBS/transporter associated domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLALLSIISWLVTLTKPLFTVWD FTFSGRDLIMLLGGIFLLFKATTELHERLENREHDTGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIVIEVFNQIARRNFIRHQS TLPLRARTADAILRLMGGKRQASTQHETDSPAAISVSEGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLSVA EIRQQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEGADVAAIAASSPAIVVPETLDPINLLGVLRRARGSFVIVTN EFGVVQGLVTPLDVLEAIAGEFPDADETPEIVADAEGWIVKGGTDLHALQQALEVDHLVNEEGDIATVAGLVIAANGHIP RVGDVIDVPPLRITIVEANDYRVDLVRIVKEQPAHDEEE
Sequences:
>Translated_519_residues MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLALLSIISWLVTLTKPLFTVWD FTFSGRDLIMLLGGIFLLFKATTELHERLENREHDTGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIVIEVFNQIARRNFIRHQS TLPLRARTADAILRLMGGKRQASTQHETDSPAAISVSEGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLSVA EIRQQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEGADVAAIAASSPAIVVPETLDPINLLGVLRRARGSFVIVTN EFGVVQGLVTPLDVLEAIAGEFPDADETPEIVADAEGWIVKGGTDLHALQQALEVDHLVNEEGDIATVAGLVIAANGHIP RVGDVIDVPPLRITIVEANDYRVDLVRIVKEQPAHDEEE >Mature_519_residues MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLALLSIISWLVTLTKPLFTVWD FTFSGRDLIMLLGGIFLLFKATTELHERLENREHDTGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIVIEVFNQIARRNFIRHQS TLPLRARTADAILRLMGGKRQASTQHETDSPAAISVSEGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLSVA EIRQQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEGADVAAIAASSPAIVVPETLDPINLLGVLRRARGSFVIVTN EFGVVQGLVTPLDVLEAIAGEFPDADETPEIVADAEGWIVKGGTDLHALQQALEVDHLVNEEGDIATVAGLVIAANGHIP RVGDVIDVPPLRITIVEANDYRVDLVRIVKEQPAHDEEE
Specific function: Unknown
COG id: COG1253
COG function: function code R; Hemolysins and related proteins containing CBS domains
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
Organism=Escherichia coli, GI1788119, Length=519, Percent_Identity=90.9441233140655, Blast_Score=934, Evalue=0.0, Organism=Escherichia coli, GI87082033, Length=519, Percent_Identity=50.2890173410405, Blast_Score=444, Evalue=1e-126, Organism=Escherichia coli, GI1789197, Length=229, Percent_Identity=50.2183406113537, Blast_Score=210, Evalue=2e-55, Organism=Escherichia coli, GI1790664, Length=241, Percent_Identity=26.9709543568465, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1786879, Length=226, Percent_Identity=32.3008849557522, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI145693175, Length=272, Percent_Identity=26.8382352941176, Blast_Score=85, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016169 - InterPro: IPR000644 - InterPro: IPR005496 - InterPro: IPR005170 [H]
Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF03741 TerC [H]
EC number: NA
Molecular weight: Translated: 56504; Mature: 56504
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLA CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH LLSIISWLVTLTKPLFTVWDFTFSGRDLIMLLGGIFLLFKATTELHERLENREHDTGHGK HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAAVVIAMAVMLLASKPLTRFVN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC QHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIVIEVFNQIARRNFIRHQS CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TLPLRARTADAILRLMGGKRQASTQHETDSPAAISVSEGAFAEEERYMINGVLTLASRSL CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH RGIMTPRGEISWVDANLSVAEIRQQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEG HHCCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ADVAAIAASSPAIVVPETLDPINLLGVLRRARGSFVIVTNEFGVVQGLVTPLDVLEAIAG CCEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHC EFPDADETPEIVADAEGWIVKGGTDLHALQQALEVDHLVNEEGDIATVAGLVIAANGHIP CCCCCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCC RVGDVIDVPPLRITIVEANDYRVDLVRIVKEQPAHDEEE CCCCEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLA CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH LLSIISWLVTLTKPLFTVWDFTFSGRDLIMLLGGIFLLFKATTELHERLENREHDTGHGK HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAAVVIAMAVMLLASKPLTRFVN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC QHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIVIEVFNQIARRNFIRHQS CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TLPLRARTADAILRLMGGKRQASTQHETDSPAAISVSEGAFAEEERYMINGVLTLASRSL CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH RGIMTPRGEISWVDANLSVAEIRQQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEEG HHCCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ADVAAIAASSPAIVVPETLDPINLLGVLRRARGSFVIVTNEFGVVQGLVTPLDVLEAIAG CCEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHC EFPDADETPEIVADAEGWIVKGGTDLHALQQALEVDHLVNEEGDIATVAGLVIAANGHIP CCCCCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCC RVGDVIDVPPLRITIVEANDYRVDLVRIVKEQPAHDEEE CCCCEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]