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The map label for this gene is ccmD [H]

Identifier: 194734401

GI number: 194734401

Start: 2357169

End: 2357342

Strand: Reverse

Name: ccmD [H]

Synonym: SeSA_A2477

Alternate gene names: 194734401

Gene position: 2357342-2357169 (Counterclockwise)

Preceding gene: 194735071

Following gene: 194736683

Centisome position: 50.06

GC content: 73.56

Gene sequence:

>174_bases
ATGGGCGGGTACGCCTTTTTTGTCTGGCTGGCGGTGGCGATGACCGTGGCGCCGCTGGCGCTGCTGGCGCTGCACACGGT
GCTGCAGCGCCGGGCCATTCTGCGCGGCGTGGCGCAGCAGCGGGCGCGCGAGGCGCGGATGCGTGCCGCACAGGCGCAAC
AGGAGGCGGCGTGA

Upstream 100 bases:

>100_bases
TTTTACTGATGGAAAAACGCCGCCCGTGGGTGAGCGAACTGATACTGAAAAGGGGGCACCGGTGAGTCCGGCATTTTCAT
CGTGGAGCGATTTTTTCGCC

Downstream 100 bases:

>100_bases
ACCTGCGACGTAAAAACCGGCTATGGGTGGTCTGCGCGGTGCTGGCGGGCCTGGGGCTGACCACCGCCCTGGTCCTGTAC
GCGCTGCGCGCGAATATCGA

Product: heme exporter protein CcmD

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmD [H]

Number of amino acids: Translated: 57; Mature: 56

Protein sequence:

>57_residues
MGGYAFFVWLAVAMTVAPLALLALHTVLQRRAILRGVAQQRAREARMRAAQAQQEAA

Sequences:

>Translated_57_residues
MGGYAFFVWLAVAMTVAPLALLALHTVLQRRAILRGVAQQRAREARMRAAQAQQEAA
>Mature_56_residues
GGYAFFVWLAVAMTVAPLALLALHTVLQRRAILRGVAQQRAREARMRAAQAQQEAA

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG3114

COG function: function code U; Heme exporter protein D

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmD/CycX/HelD family [H]

Homologues:

Organism=Escherichia coli, GI1788526, Length=57, Percent_Identity=80.7017543859649, Blast_Score=71, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007078 [H]

Pfam domain/function: PF04995 CcmD [H]

EC number: NA

Molecular weight: Translated: 6251; Mature: 6119

Theoretical pI: Translated: 12.38; Mature: 12.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGYAFFVWLAVAMTVAPLALLALHTVLQRRAILRGVAQQRAREARMRAAQAQQEAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GGYAFFVWLAVAMTVAPLALLALHTVLQRRAILRGVAQQRAREARMRAAQAQQEAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]