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The map label for this gene is yvbU [H]

Identifier: 194734263

GI number: 194734263

Start: 3085233

End: 3086096

Strand: Reverse

Name: yvbU [H]

Synonym: SeSA_A3189

Alternate gene names: 194734263

Gene position: 3086096-3085233 (Counterclockwise)

Preceding gene: 194738397

Following gene: 194738001

Centisome position: 65.54

GC content: 54.75

Gene sequence:

>864_bases
ATGCGTTACTCACCTGAAGCGTTAATGGCATTTGTTGAGACCGTCTCTTGCGGTTCGTTTTCTGCGGCGGCGCGCCGCCT
GCGTAAAAGCCAGTCCACCATTAGTACCGCCATTGCGCATCTGGAGGCGGATCTGGGATTTTCATTATTTGATCGATCTT
CGCGCCAGCCCGTTCTGACCGAAGAAGGAAAACGGGTGCTTAGCTATGTTCAGGCTATTTTATCGGCGAGCGATCGTCTG
GATGAGGTGGCGCTGACATTATCCGGCGAGACGGAGGCAAGACTCACGTTCGTCCTCTCTGATACCCTGCACCCTGACAG
TCTGGAAGAGTTAATGGCGCAGTTTGATCGTCAATTTCCGCATACCGAGTTTGAATGTTTGATCGGAGAAAATGATGATG
TCATCGACCTGCTGCAAAAAGGGCGCGCCCAGATAGGCCTGATTGAAGCGCGTGATGACTATCCCACAGACATTGGCGCG
ACGCGTCTGCCTGTTCAAAGCTGGATGGGGGTTTATGTGGCGACCACGCATCCGTTGGCGTCGCAGACGAACCTGCAATG
GGAGCAACTGCATACCTGGCGCGAGCTGCGTCTGAATACCTACCTTGAATCTAACGCCAACATTACGCGCGGCCCGGCCT
GGTCAGCGCCAAACTATTTATTGCTGTTGAGCATGGCGGTTCAGGGATTTGGCTGGTGCGTATTGCCCTGCGCGCTGGTG
GAAGAGTTTGCGGCGGAAAAACCGCTGGCGCAGCTGGATGTTCCTGGCTGGCCGAGGGCGATTGCTATTGATTTGCTGTG
GAACAAGAAAACGCCGCCCGGAACGGCGGGGAACTGGCTTCGCTACCATTTGCAGCAGAAATAA

Upstream 100 bases:

>100_bases
CGAAAAAACCTTACTCTTAATCAAACGAAAGAAATTTCCGCTATTTTATCGTTTAATGTGATACCTAAAAGATAACATCC
ATCGATAAAATAGATATGTT

Downstream 100 bases:

>100_bases
GCTGCGTCACCGTCAAATCAGCGTCATTTCCTTTGTGATAAAACTCACTTTTTTTAAACAATCAAGATAACTAATTTTAA
CAATGCTCTACTATGGCGGT

Product: transcriptional regulator, LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MRYSPEALMAFVETVSCGSFSAAARRLRKSQSTISTAIAHLEADLGFSLFDRSSRQPVLTEEGKRVLSYVQAILSASDRL
DEVALTLSGETEARLTFVLSDTLHPDSLEELMAQFDRQFPHTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGA
TRLPVQSWMGVYVATTHPLASQTNLQWEQLHTWRELRLNTYLESNANITRGPAWSAPNYLLLLSMAVQGFGWCVLPCALV
EEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTAGNWLRYHLQQK

Sequences:

>Translated_287_residues
MRYSPEALMAFVETVSCGSFSAAARRLRKSQSTISTAIAHLEADLGFSLFDRSSRQPVLTEEGKRVLSYVQAILSASDRL
DEVALTLSGETEARLTFVLSDTLHPDSLEELMAQFDRQFPHTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGA
TRLPVQSWMGVYVATTHPLASQTNLQWEQLHTWRELRLNTYLESNANITRGPAWSAPNYLLLLSMAVQGFGWCVLPCALV
EEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTAGNWLRYHLQQK
>Mature_287_residues
MRYSPEALMAFVETVSCGSFSAAARRLRKSQSTISTAIAHLEADLGFSLFDRSSRQPVLTEEGKRVLSYVQAILSASDRL
DEVALTLSGETEARLTFVLSDTLHPDSLEELMAQFDRQFPHTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGA
TRLPVQSWMGVYVATTHPLASQTNLQWEQLHTWRELRLNTYLESNANITRGPAWSAPNYLLLLSMAVQGFGWCVLPCALV
EEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTAGNWLRYHLQQK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=281, Percent_Identity=25.2669039145907, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082024, Length=272, Percent_Identity=26.1029411764706, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1786401, Length=146, Percent_Identity=34.9315068493151, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786508, Length=299, Percent_Identity=27.0903010033445, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=184, Percent_Identity=27.1739130434783, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788296, Length=177, Percent_Identity=28.8135593220339, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32134; Mature: 32134

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYSPEALMAFVETVSCGSFSAAARRLRKSQSTISTAIAHLEADLGFSLFDRSSRQPVLT
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHH
EEGKRVLSYVQAILSASDRLDEVALTLSGETEARLTFVLSDTLHPDSLEELMAQFDRQFP
HHHHHHHHHHHHHHHHHHCHHHEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC
HTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGATRLPVQSWMGVYVATTHPLA
CCCEEEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCEEEEECCCCC
SQTNLQWEQLHTWRELRLNTYLESNANITRGPAWSAPNYLLLLSMAVQGFGWCVLPCALV
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
EEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTAGNWLRYHLQQK
HHHHHCCCCHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHEECCC
>Mature Secondary Structure
MRYSPEALMAFVETVSCGSFSAAARRLRKSQSTISTAIAHLEADLGFSLFDRSSRQPVLT
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHH
EEGKRVLSYVQAILSASDRLDEVALTLSGETEARLTFVLSDTLHPDSLEELMAQFDRQFP
HHHHHHHHHHHHHHHHHHCHHHEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC
HTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGATRLPVQSWMGVYVATTHPLA
CCCEEEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCEEEEECCCCC
SQTNLQWEQLHTWRELRLNTYLESNANITRGPAWSAPNYLLLLSMAVQGFGWCVLPCALV
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
EEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTAGNWLRYHLQQK
HHHHHCCCCHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]