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The map label for this gene is ycbB [H]

Identifier: 194734245

GI number: 194734245

Start: 1093527

End: 1095374

Strand: Direct

Name: ycbB [H]

Synonym: SeSA_A1110

Alternate gene names: 194734245

Gene position: 1093527-1095374 (Clockwise)

Preceding gene: 194735619

Following gene: 194734847

Centisome position: 23.22

GC content: 56.93

Gene sequence:

>1848_bases
ATGTTGCTTAATAAGATGTGTGGTCGTTGTCTGTCGGCAATCAGTTTATGCCTGGCCGTAACATTCGCTCCACTGTTCAA
TGCGCAGGCCGATGAGCCTGAAATGATACCTGGCGATAGCGCCGTTGCCGCGACGGATCAGGCTGGGCCGCAGAAGCAAT
CAGCCGCGACGGCGATTATGGCCGGGATTCAGCCGCTGCCGGAGGGCGTTTCAGCCGAGAAAGTCCGGGCTGATTTACAG
TCGCAGCTTCCTTCCGGCTATACGCCGGTCTATATGAGCCAGCTGACATTGCTGTATGCCGCGCGCGACATGAAGCCCAT
GTGGGATAATCGCGATGCGGTGAAAGCCTTCCAGCAACAGTTGGCGGAGGTGGCGATTGCCGGATTCCAGCCGCAGTTTA
CCGCCTGGGTGGCATTGTTGACCGATCCCGCCGTAAACGGTATGGCGCGTGATGTTGTGTTGTCAGACGCCATGATGGGC
TATCTCCATTTCATTGCGAATATCCCCGTCAAAGGCCAGCGCTGGTTATATAGCAACAAACCTTACGCATTGGCGACGCC
GCCAGTCTCGGTGATTAACCAGTGGCAAATCGCGCTGGAAGAGGGCCAGTTGCCGATGTTTGTCGCCAGCCTGGCGCCGC
AGCATCCACAGTATGCGCCCATGCATGACGCGCTACTGAAGCTGGTGGCGGACTCTCGCCCGTGGCCGCAGTTGGCCAAT
ACCGCGACGCTGCGCCCGGGGCAATGGAGTAACGATGTGCCTGCGCTGCGCGAAATATTACAGCGTACGGGGACGCTGGA
TGGCGGTCCAAAGATAGCCTTACCCGGCGATAACACTGCTGATAGCGCCGTCGTCAGCCCCTCCGCCGCGGTAGTCGAAA
CATCGGTGGCGCAGCCGGTCGACGAACAAACGGCCCGCCGTAGTAAGTCGGCTCCGGCGGCACGCGCCTACGATCGTGAA
CTGGTCGAGGCGGTAAAGCGTTTTCAGGCATGGCAAGGGCTGGGGGCGGATGGCGTTATTGGCCCGGCGACGCGTAACTG
GCTTAATATGACCCCCGCGCAACGCGCAGGCGTACTGGCACTGAATATCCAACGTTTACGCCTGCTGCCGGCGGAACTCT
CTACCGGTATTATGGTAAACATTCCCGCTTATTCGCTGGTCTACTATCAGAATGGCAACCAGGTGCTGGCTTCGAGGGTG
ATCGTCGGGCGTCCTGACCGTAAAACGCCGATGATGAGCAGCGCGCTGAATAATGTGGTGGTGAACCCGCCGTGGAACGT
TCCGCCCACGCTTGCGCGTAAAGACATTTTACCGAAGGTGTGGAATGACCCAGGCTATCTGGAGCGTCATGGCTACACCG
TGATGCGCGGCTGGAACAGCAAAGAAGCGATCGATCCGTGGCAGGTTGACTGGGCCACCATTACGCCATCGAATCTTCCG
TTCCGTTTCCAGCAGGCGCCAGGCGCGCACAATTCGCTGGGGCGTTATAAATTTAATATGCCGAGTTCAGATGCTATCTA
TCTGCACGATACGCCCAACCATAATCTCTTTCAGCGTGACGCCAGGGCGTTAAGTTCCGGCTGCGTGCGGGTCAATAAGG
CCTCTGAACTGGCGAATATGCTCTTGCAGGATGCTGGCTGGAACGATGCGCGGATCTCAGGCGCCCTGAAGCAAGGCGAC
ACGCGGTATGTCAATATCCGGCAGAACATTCCAGTAAATCTTTACTATCTGACCGCGTTTGTCGGCGCAGATGGACGTAT
GCAATATCGTACAGATATTTACAATTACGATCTCACAGCGCGATCCAGCGCACAAATTGTGCCAAAGGTTGAACAATTAA
TCAGGTAA

Upstream 100 bases:

>100_bases
GGCTGACTCGTCATACTAAACAAAAGCATTGGTTGCGGTTGACCCGCGCTGCGGGCAGCACAGTCATGCGGAGTATGATA
ATGAAAACAGGGGGCAAGGG

Downstream 100 bases:

>100_bases
ATGAAGAAGTTCTGGTAAATATGTTGTCCTAATGTTTGGCTTCAACGGGGCGTTTCGCTGTAGACCCCCGTTGTGGCTGG
GGGAGGGCCATCTTGACGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAATDQAGPQKQSAATAIMAGIQPLPEGVSAEKVRADLQ
SQLPSGYTPVYMSQLTLLYAARDMKPMWDNRDAVKAFQQQLAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMG
YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLAN
TATLRPGQWSNDVPALREILQRTGTLDGGPKIALPGDNTADSAVVSPSAAVVETSVAQPVDEQTARRSKSAPAARAYDRE
LVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQVLASRV
IVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLP
FRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDAGWNDARISGALKQGD
TRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARSSAQIVPKVEQLIR

Sequences:

>Translated_615_residues
MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAATDQAGPQKQSAATAIMAGIQPLPEGVSAEKVRADLQ
SQLPSGYTPVYMSQLTLLYAARDMKPMWDNRDAVKAFQQQLAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMG
YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLAN
TATLRPGQWSNDVPALREILQRTGTLDGGPKIALPGDNTADSAVVSPSAAVVETSVAQPVDEQTARRSKSAPAARAYDRE
LVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQVLASRV
IVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLP
FRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDAGWNDARISGALKQGD
TRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARSSAQIVPKVEQLIR
>Mature_615_residues
MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAATDQAGPQKQSAATAIMAGIQPLPEGVSAEKVRADLQ
SQLPSGYTPVYMSQLTLLYAARDMKPMWDNRDAVKAFQQQLAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMG
YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLAN
TATLRPGQWSNDVPALREILQRTGTLDGGPKIALPGDNTADSAVVSPSAAVVETSVAQPVDEQTARRSKSAPAARAYDRE
LVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQVLASRV
IVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLP
FRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDAGWNDARISGALKQGD
TRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARSSAQIVPKVEQLIR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=616, Percent_Identity=84.5779220779221, Blast_Score=1071, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 67521; Mature: 67521

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAATDQAGPQKQSAATAIM
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHH
AGIQPLPEGVSAEKVRADLQSQLPSGYTPVYMSQLTLLYAARDMKPMWDNRDAVKAFQQQ
HCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMGYLHFIANIPVKGQRWLYSNK
HHHHHHHCCCCHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
PYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLAN
CEEEECCCHHHHHHHHEEEECCCCCEEHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHCC
TATLRPGQWSNDVPALREILQRTGTLDGGPKIALPGDNTADSAVVSPSAAVVETSVAQPV
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEECCCHHHHHHHHCCCC
DEQTARRSKSAPAARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCEEE
LNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVV
EEHHHHHEEHHHHCCCEEEECCCEEEEEEECCCEEEEHHEEECCCCCCCCHHHHHHCCEE
VNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLP
ECCCCCCCHHHHHHHCCHHHCCCCCCEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCC
FRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANM
EEEECCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECHHHHHHHH
LLQDAGWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTA
HHHCCCCCCHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEEECCCC
RSSAQIVPKVEQLIR
CCCCHHHHHHHHHCC
>Mature Secondary Structure
MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAATDQAGPQKQSAATAIM
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHH
AGIQPLPEGVSAEKVRADLQSQLPSGYTPVYMSQLTLLYAARDMKPMWDNRDAVKAFQQQ
HCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMGYLHFIANIPVKGQRWLYSNK
HHHHHHHCCCCHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
PYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLAN
CEEEECCCHHHHHHHHEEEECCCCCEEHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHCC
TATLRPGQWSNDVPALREILQRTGTLDGGPKIALPGDNTADSAVVSPSAAVVETSVAQPV
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEECCCHHHHHHHHCCCC
DEQTARRSKSAPAARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCEEE
LNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVV
EEHHHHHEEHHHHCCCEEEECCCEEEEEEECCCEEEEHHEEECCCCCCCCHHHHHHCCEE
VNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLP
ECCCCCCCHHHHHHHCCHHHCCCCCCEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCC
FRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANM
EEEECCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECHHHHHHHH
LLQDAGWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTA
HHHCCCCCCHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEEECCCC
RSSAQIVPKVEQLIR
CCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]