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The map label for this gene is yhcC [H]

Identifier: 194734099

GI number: 194734099

Start: 3392055

End: 3392984

Strand: Reverse

Name: yhcC [H]

Synonym: SeSA_A3522

Alternate gene names: 194734099

Gene position: 3392984-3392055 (Counterclockwise)

Preceding gene: 194735321

Following gene: 194734174

Centisome position: 72.05

GC content: 56.24

Gene sequence:

>930_bases
ATGCAGTTACAGAAATTAGTCAATATGTTTGGTGGGGATCTTTTACGTCGGTATGGGCAAAAGGTTCATAAGCTGACGCT
TCATGGCGGTTTTAGCTGCCCTAATCGCGACGGTACCATCGGGCGTGGCGGTTGCACCTTCTGTAATGTCGCCTCTTTTG
CCGATGAGGCGCAGCAGCATCATTCCATTGCCGAGCAGCTTGCGCATCAGGCGCATCTGGTGAACCGCGCTAAACGCTAT
CTGGCCTATTTCCAGGCCTACACCAGCACCTTTGCGGAAGTGCAGGTGCTGCGTTCCATGTATCAACAGGCGGTCAGCCA
GGCCAGTATCGTCGGGTTATGTGTCGGTACGCGTCCGGATTGCGTCCCGCAGGCAGTAGTAGATTTACTGTGTGAATATA
AAGATCAAGGCTACGAGGTGTGGCTGGAACTGGGATTGCAAACCGCGCACGATAAAACCCTGCACCGAATTAACCGCGGG
CATGACTTCGCCTGCTATCAGCGTACCACCCGGATTGCCCGGGAGCGCGGGCTGAAAGTGTGCGCGCATCTGATTGTGGG
GCTGCCGGGAGAAGGGCAGGCAGAATGCCTGCAAACCATGGAGCGTGTGGTGGAGACGGGCGTAGACGGTATTAAACTGC
ATCCGCTACATATTGTGAAAGGCAGTACGATGGCCAAAGCCTGGGAAGCGGGGCGGCTGAACGGCATCGAACTGGAAGAC
TACACGCTAACGGCAGGTGAGATGATTCGTCATACGCCGCCGGAGATAATTTATCACCGGATTTCAGCCAGCGCTCGCCG
TCCGACGCTGCTTGCCCCGCTGTGGTGTGAGAATCGCTGGACGGGGATGGTTGAGCTGGACAAATACCTGAATGAGCATG
GCGTACAGGGCTCTGCGCTGGCCCGTCCCTGGATACCACCTGTAGCGTAG

Upstream 100 bases:

>100_bases
AATGGATAAAAGCCTTCCGGGACGATTGATCCAGGTCATCGCCAAAGGAGACTAAAAATGGCAGGCTTTGGCCTCTTTTT
AAGAGGCGGTCTATCAGATT

Downstream 100 bases:

>100_bases
CGTGATGAGGGGCGCTACGCATATTTCGCACAATATTCAACGCGGTTCCCATAATTGGGTATTATGTGCGAAGTTGTGGT
GAAGGAATCCTCTATGAAGC

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MQLQKLVNMFGGDLLRRYGQKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEAQQHHSIAEQLAHQAHLVNRAKRY
LAYFQAYTSTFAEVQVLRSMYQQAVSQASIVGLCVGTRPDCVPQAVVDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRG
HDFACYQRTTRIARERGLKVCAHLIVGLPGEGQAECLQTMERVVETGVDGIKLHPLHIVKGSTMAKAWEAGRLNGIELED
YTLTAGEMIRHTPPEIIYHRISASARRPTLLAPLWCENRWTGMVELDKYLNEHGVQGSALARPWIPPVA

Sequences:

>Translated_309_residues
MQLQKLVNMFGGDLLRRYGQKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEAQQHHSIAEQLAHQAHLVNRAKRY
LAYFQAYTSTFAEVQVLRSMYQQAVSQASIVGLCVGTRPDCVPQAVVDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRG
HDFACYQRTTRIARERGLKVCAHLIVGLPGEGQAECLQTMERVVETGVDGIKLHPLHIVKGSTMAKAWEAGRLNGIELED
YTLTAGEMIRHTPPEIIYHRISASARRPTLLAPLWCENRWTGMVELDKYLNEHGVQGSALARPWIPPVA
>Mature_309_residues
MQLQKLVNMFGGDLLRRYGQKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEAQQHHSIAEQLAHQAHLVNRAKRY
LAYFQAYTSTFAEVQVLRSMYQQAVSQASIVGLCVGTRPDCVPQAVVDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRG
HDFACYQRTTRIARERGLKVCAHLIVGLPGEGQAECLQTMERVVETGVDGIKLHPLHIVKGSTMAKAWEAGRLNGIELED
YTLTAGEMIRHTPPEIIYHRISASARRPTLLAPLWCENRWTGMVELDKYLNEHGVQGSALARPWIPPVA

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0486 [H]

Homologues:

Organism=Homo sapiens, GI23510283, Length=170, Percent_Identity=24.7058823529412, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI2367204, Length=308, Percent_Identity=94.4805194805195, Blast_Score=617, Evalue=1e-178,
Organism=Caenorhabditis elegans, GI133955098, Length=134, Percent_Identity=28.3582089552239, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6325171, Length=174, Percent_Identity=22.9885057471264, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 34554; Mature: 34554

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLQKLVNMFGGDLLRRYGQKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEAQQH
CCHHHHHHHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
HSIAEQLAHQAHLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQQAVSQASIVGLCVGTRPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCC
CVPQAVVDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRGHDFACYQRTTRIARERGLKV
HHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
CAHLIVGLPGEGQAECLQTMERVVETGVDGIKLHPLHIVKGSTMAKAWEAGRLNGIELED
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEECEEEEECCCHHHHHHHCCCCCCCEECC
YTLTAGEMIRHTPPEIIYHRISASARRPTLLAPLWCENRWTGMVELDKYLNEHGVQGSAL
EEECHHHHHHCCCHHHHHHHHHCCCCCCCEECEECCCCCCCCHHHHHHHHHHHCCCCCCC
ARPWIPPVA
CCCCCCCCC
>Mature Secondary Structure
MQLQKLVNMFGGDLLRRYGQKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEAQQH
CCHHHHHHHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
HSIAEQLAHQAHLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQQAVSQASIVGLCVGTRPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCC
CVPQAVVDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRGHDFACYQRTTRIARERGLKV
HHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
CAHLIVGLPGEGQAECLQTMERVVETGVDGIKLHPLHIVKGSTMAKAWEAGRLNGIELED
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEECEEEEECCCHHHHHHHCCCCCCCEECC
YTLTAGEMIRHTPPEIIYHRISASARRPTLLAPLWCENRWTGMVELDKYLNEHGVQGSAL
EEECHHHHHHCCCHHHHHHHHHCCCCCCCEECEECCCCCCCCHHHHHHHHHHHCCCCCCC
ARPWIPPVA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]