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The map label for this gene is yobD

Identifier: 194734017

GI number: 194734017

Start: 1909289

End: 1909747

Strand: Direct

Name: yobD

Synonym: SeSA_A1976

Alternate gene names: 194734017

Gene position: 1909289-1909747 (Clockwise)

Preceding gene: 194734014

Following gene: 194735188

Centisome position: 40.54

GC content: 45.32

Gene sequence:

>459_bases
ATGACTATCACGGACCTGGTGCTGATTCTCTTTATTGCCGCATTATTGGCTTACGCTCTCTACGATCAGTTCATCATGCC
CCGTCGCAATGGCCCCACTCTGCTTTCTATAGCCCTGCTTCGCCGTGGTCGCGTAGACAGCGTTATCTTCGTTGGGCTGG
TCGCCATCCTTATTTATAACAACGTAACCAGCCACGGAGCGCAGATGACCACATGGTTATTAAGTGCGCTGGCGTTAATG
GGGTTTTATATATTCTGGATCCGCACGCCACGGATCATCTTTAAACAACGTGGCTTTTTCTTCGCCAATGTCTGGATAGA
ATATAACCGTATTAAAGAGATGAATTTATCGGAGGACGGCGTACTGGTGATGCAATTAGAACAACGACGCTTGCTTATCC
GTGTACGCAATATCGACGATCTGGAAAAAATATATAAGCTTCTTATTGAAAATCAATAA

Upstream 100 bases:

>100_bases
ATCGGTATCGCCGGCTACTCCGTAGGACTGCTGGGCCAATAAGGCTGTTGTACACTACCGGGGCCAAACGGCCCCGTTTT
TTTATTTCTCTGGAGGATAA

Downstream 100 bases:

>100_bases
CCTAAGATATAGCCTCAACTATGTTTTTCGAATTTTATTTCGAATCATAATATAGCTAAGGCTATATTTTCTATTGACCA
ATTGTTATTTAATTTAACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MTITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGRVDSVIFVGLVAILIYNNVTSHGAQMTTWLLSALALM
GFYIFWIRTPRIIFKQRGFFFANVWIEYNRIKEMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQ

Sequences:

>Translated_152_residues
MTITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGRVDSVIFVGLVAILIYNNVTSHGAQMTTWLLSALALM
GFYIFWIRTPRIIFKQRGFFFANVWIEYNRIKEMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQ
>Mature_151_residues
TITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGRVDSVIFVGLVAILIYNNVTSHGAQMTTWLLSALALMG
FYIFWIRTPRIIFKQRGFFFANVWIEYNRIKEMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQ

Specific function: Unknown

COG id: COG4811

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0266 family

Homologues:

Organism=Escherichia coli, GI1788123, Length=152, Percent_Identity=88.1578947368421, Blast_Score=276, Evalue=3e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOBD_SALTY (Q8ZP01)

Other databases:

- EMBL:   AE006468
- RefSeq:   NP_460789.1
- GeneID:   1253352
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1833
- NMPDR:   fig|99287.1.peg.1774
- HOGENOM:   HBG391110
- OMA:   RVRNIDN
- ProtClustDB:   PRK02913
- BioCyc:   STYP99287:STM1833-MONOMER
- HAMAP:   MF_01071
- InterPro:   IPR009328
- PIRSF:   PIRSF020687
- ProDom:   PD091196

Pfam domain/function: PF06173 DUF986

EC number: NA

Molecular weight: Translated: 17784; Mature: 17652

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1e5c4b20)-; HASH(0x1f37a130)-; HASH(0x1f7b54f8)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGRVDSVIFVGLVAILIYN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHC
NVTSHGAQMTTWLLSALALMGFYIFWIRTPRIIFKQRGFFFANVWIEYNRIKEMNLSEDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEEEECHHEECCCCCCC
VLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQ
EEEEEEHHHHHHHHCCCCHHHHHHHHHHHCCH
>Mature Secondary Structure 
TITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGRVDSVIFVGLVAILIYN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHC
NVTSHGAQMTTWLLSALALMGFYIFWIRTPRIIFKQRGFFFANVWIEYNRIKEMNLSEDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEEEECHHEECCCCCCC
VLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQ
EEEEEEHHHHHHHHCCCCHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609