| Definition | Prosthecochloris aestuarii DSM 271 chromosome, complete genome. |
|---|---|
| Accession | NC_011059 |
| Length | 2,512,923 |
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The map label for this gene is ycdF [H]
Identifier: 194334599
GI number: 194334599
Start: 1965490
End: 1966317
Strand: Reverse
Name: ycdF [H]
Synonym: Paes_1800
Alternate gene names: 194334599
Gene position: 1966317-1965490 (Counterclockwise)
Preceding gene: 194334600
Following gene: 194334598
Centisome position: 78.25
GC content: 50.36
Gene sequence:
>828_bases ATGCCCGGGATTTTACAAGACAAAATTGCAATCATAACCGGTTCCACAAAAGGGATTGGTCTGGCTATTGCCCGGGCCTA TGTAAGTCAGGGGGCGAAGGTTGTCATTACTTCAAGCAGTCAGAAGAATGTTGATGCAGCAATACGTGAGTTTCCCGCAG CCCGTGTTCTCGGCCTGGTCTGTGATGTGTCGGATTCGGAGGGCGTTGAAAAGCTCATTCAGGAAACCCTCACCCATTTC GGTGCGCTCGATATTCTTATCAACAACGCAGGGATCTCTGATCCGTTCTACAATATTACCGATAGTGATCCCGCCGTATG GGGGCGGGTTATCGATATTAACCTGAAAGGGACCTACTATGGCTGTCGTGCAGCCATGAACTACTTTCTTGAATCCGGCC GTCCGGGAAAAATTATCAACCTGGCGGGTTCCGGTACCGATAAACGCTCCAACACCCCCTTCATCAGCGCGTACGGATCG ACCAAGGCTGCAATCGCCCGCTTTACGTATGCTATCGCAGCAGAGTATAAAGATACCTCTGTTTCGATCATGCTGCTTCA TCCCGGCCTTGTCAGAACCGAGATAATCAGCACAGAAAACCCTACGCCTGAGATGCAGCGACAGCTCGGAACATTTGAAA CTATCGTAGAGATATTCGCGCAGCCGCCCACCGTTGCCGCACGTCTTGCCATCAAAATGGCTTCATCCTGGAGCGACGGC AAAACAGGGATCTATCTCTCCGCGCTCAATGGATGGAGAAAAAAAATGCTCTTACTTTCCTGGCCGTTGCGTAAACTGTT GAACAGGATCGACCGCAACAATTACTAA
Upstream 100 bases:
>100_bases TCCCGACAAGTCGGGATGAGGATTTCGAGTACCGACCAACGACGTATTCGGGTCGCGCAGCAAATTTATAGAGGTGTCCT CAACAAACCTACAGTTCAGC
Downstream 100 bases:
>100_bases ACCCTTTTCCTCATGGTCCGGCGCTCTCTTTTTCCATTGCTTTTCCTCTGCATGTTCATGATGCATGGATGTTACAGTTT CAGCGGCTCGTCAGTTCCAG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: GLCDH-II; GDH-II; General stress protein 74; GSP74 [H]
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MPGILQDKIAIITGSTKGIGLAIARAYVSQGAKVVITSSSQKNVDAAIREFPAARVLGLVCDVSDSEGVEKLIQETLTHF GALDILINNAGISDPFYNITDSDPAVWGRVIDINLKGTYYGCRAAMNYFLESGRPGKIINLAGSGTDKRSNTPFISAYGS TKAAIARFTYAIAAEYKDTSVSIMLLHPGLVRTEIISTENPTPEMQRQLGTFETIVEIFAQPPTVAARLAIKMASSWSDG KTGIYLSALNGWRKKMLLLSWPLRKLLNRIDRNNY
Sequences:
>Translated_275_residues MPGILQDKIAIITGSTKGIGLAIARAYVSQGAKVVITSSSQKNVDAAIREFPAARVLGLVCDVSDSEGVEKLIQETLTHF GALDILINNAGISDPFYNITDSDPAVWGRVIDINLKGTYYGCRAAMNYFLESGRPGKIINLAGSGTDKRSNTPFISAYGS TKAAIARFTYAIAAEYKDTSVSIMLLHPGLVRTEIISTENPTPEMQRQLGTFETIVEIFAQPPTVAARLAIKMASSWSDG KTGIYLSALNGWRKKMLLLSWPLRKLLNRIDRNNY >Mature_274_residues PGILQDKIAIITGSTKGIGLAIARAYVSQGAKVVITSSSQKNVDAAIREFPAARVLGLVCDVSDSEGVEKLIQETLTHFG ALDILINNAGISDPFYNITDSDPAVWGRVIDINLKGTYYGCRAAMNYFLESGRPGKIINLAGSGTDKRSNTPFISAYGST KAAIARFTYAIAAEYKDTSVSIMLLHPGLVRTEIISTENPTPEMQRQLGTFETIVEIFAQPPTVAARLAIKMASSWSDGK TGIYLSALNGWRKKMLLLSWPLRKLLNRIDRNNY
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=191, Percent_Identity=33.5078534031414, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI19923817, Length=202, Percent_Identity=29.2079207920792, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=29.3814432989691, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI5031737, Length=194, Percent_Identity=29.3814432989691, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI126723191, Length=190, Percent_Identity=31.5789473684211, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI31542939, Length=239, Percent_Identity=27.6150627615063, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI59889578, Length=232, Percent_Identity=28.0172413793103, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI20149619, Length=204, Percent_Identity=29.9019607843137, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI7705925, Length=198, Percent_Identity=29.2929292929293, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI40254992, Length=216, Percent_Identity=26.3888888888889, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI109715829, Length=218, Percent_Identity=26.605504587156, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI224922801, Length=176, Percent_Identity=29.5454545454545, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI126723750, Length=194, Percent_Identity=27.8350515463918, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI10190704, Length=193, Percent_Identity=31.6062176165803, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI4503817, Length=251, Percent_Identity=29.0836653386454, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI4758504, Length=205, Percent_Identity=28.2926829268293, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI186928839, Length=209, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1787335, Length=193, Percent_Identity=30.5699481865285, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=31.7948717948718, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1789208, Length=260, Percent_Identity=25.7692307692308, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787820, Length=188, Percent_Identity=28.7234042553192, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI2367365, Length=228, Percent_Identity=27.6315789473684, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI87082160, Length=206, Percent_Identity=28.6407766990291, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787526, Length=209, Percent_Identity=24.8803827751196, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790717, Length=195, Percent_Identity=23.5897435897436, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1786812, Length=192, Percent_Identity=31.25, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788459, Length=195, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789378, Length=229, Percent_Identity=25.764192139738, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI2367175, Length=194, Percent_Identity=25.7731958762887, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17561402, Length=194, Percent_Identity=32.4742268041237, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17560220, Length=252, Percent_Identity=30.952380952381, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17562906, Length=213, Percent_Identity=28.169014084507, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI193204405, Length=252, Percent_Identity=30.1587301587302, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI72000259, Length=211, Percent_Identity=27.0142180094787, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560676, Length=198, Percent_Identity=30.3030303030303, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562908, Length=195, Percent_Identity=29.2307692307692, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17563726, Length=222, Percent_Identity=28.3783783783784, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562910, Length=204, Percent_Identity=29.4117647058824, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=28.90625, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17531453, Length=252, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI86565303, Length=216, Percent_Identity=28.2407407407407, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538486, Length=200, Percent_Identity=32, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17555612, Length=261, Percent_Identity=27.9693486590038, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=28.2051282051282, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562990, Length=192, Percent_Identity=28.125, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560332, Length=277, Percent_Identity=28.5198555956679, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17551412, Length=206, Percent_Identity=29.6116504854369, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17544670, Length=213, Percent_Identity=29.5774647887324, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71997099, Length=213, Percent_Identity=30.5164319248826, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562904, Length=198, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17565030, Length=197, Percent_Identity=28.4263959390863, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI25147288, Length=204, Percent_Identity=29.9019607843137, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17555706, Length=226, Percent_Identity=26.9911504424779, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17538480, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=251, Percent_Identity=26.2948207171315, Blast_Score=82, Evalue=9e-17, Organism=Saccharomyces cerevisiae, GI6322861, Length=227, Percent_Identity=30.3964757709251, Blast_Score=80, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=30.5418719211823, Blast_Score=71, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322226, Length=252, Percent_Identity=25.7936507936508, Blast_Score=69, Evalue=6e-13, Organism=Drosophila melanogaster, GI21355319, Length=193, Percent_Identity=33.160621761658, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI23397609, Length=193, Percent_Identity=30.0518134715026, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24641232, Length=201, Percent_Identity=29.3532338308458, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24639444, Length=232, Percent_Identity=28.448275862069, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI116007236, Length=236, Percent_Identity=27.9661016949153, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=25.4901960784314, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI281364494, Length=203, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI21357041, Length=262, Percent_Identity=25.1908396946565, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24665247, Length=201, Percent_Identity=28.3582089552239, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI221331216, Length=201, Percent_Identity=28.3582089552239, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24665243, Length=201, Percent_Identity=28.8557213930348, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=26.7441860465116, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI221331218, Length=201, Percent_Identity=28.8557213930348, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24640442, Length=207, Percent_Identity=28.5024154589372, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24648693, Length=235, Percent_Identity=29.3617021276596, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355889, Length=235, Percent_Identity=29.3617021276596, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24641388, Length=232, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24663911, Length=203, Percent_Identity=25.615763546798, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007234, Length=204, Percent_Identity=26.9607843137255, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI161076933, Length=204, Percent_Identity=27.4509803921569, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24584748, Length=204, Percent_Identity=27.4509803921569, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21357673, Length=197, Percent_Identity=27.9187817258883, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 29922; Mature: 29791
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGILQDKIAIITGSTKGIGLAIARAYVSQGAKVVITSSSQKNVDAAIREFPAARVLGLV CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCHHHHHHHE CDVSDSEGVEKLIQETLTHFGALDILINNAGISDPFYNITDSDPAVWGRVIDINLKGTYY EECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCHH GCRAAMNYFLESGRPGKIINLAGSGTDKRSNTPFISAYGSTKAAIARFTYAIAAEYKDTS HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHEEECCCCE VSIMLLHPGLVRTEIISTENPTPEMQRQLGTFETIVEIFAQPPTVAARLAIKMASSWSDG EEEEEECCCCEEEEEECCCCCCHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC KTGIYLSALNGWRKKMLLLSWPLRKLLNRIDRNNY CCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PGILQDKIAIITGSTKGIGLAIARAYVSQGAKVVITSSSQKNVDAAIREFPAARVLGLV CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCHHHHHHHE CDVSDSEGVEKLIQETLTHFGALDILINNAGISDPFYNITDSDPAVWGRVIDINLKGTYY EECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCHH GCRAAMNYFLESGRPGKIINLAGSGTDKRSNTPFISAYGSTKAAIARFTYAIAAEYKDTS HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHEEECCCCE VSIMLLHPGLVRTEIISTENPTPEMQRQLGTFETIVEIFAQPPTVAARLAIKMASSWSDG EEEEEECCCCEEEEEECCCCCCHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC KTGIYLSALNGWRKKMLLLSWPLRKLLNRIDRNNY CCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274031; 9384377; 9298659 [H]