Click here to switch to the map view.

The map label for this gene is pscD [H]

Identifier: 194333588

GI number: 194333588

Start: 804433

End: 804816

Strand: Reverse

Name: pscD [H]

Synonym: Paes_0754

Alternate gene names: 194333588

Gene position: 804816-804433 (Counterclockwise)

Preceding gene: 194333589

Following gene: 194333578

Centisome position: 32.03

GC content: 42.45

Gene sequence:

>384_bases
ATGCAATCAGCCGTATGGTCAGGTAACGCCCTGCACAAAGTTACCAAATATTATATTACCTCAGCCAAAAGGGATCGTAA
CGGGAAGCTTGATATAACAGTATCACCTGCTTCGGGCCGAACGAACCTCAAGCCAACTGAAAAGTTCATTGATCAGCTGA
AAAATGGAGAAATCCAGCTTCTGGTTTTAACCAATCAACCGGATATAGCTCTTGATATGGACAAAAAAGTGCTTGACAAC
GAAAACCGTTACGTGATAGATTTCGACAAAAGGGGTGTCAAGTGGACCATGAGAGATCTGCCTGTCTATTTCAATACGAT
GAAAAACACACTTTGTGTTGAGGTAGACGGGGTCAGTTATTCACTTGACAGCTTCTTCAAGTAG

Upstream 100 bases:

>100_bases
CGTCATGAATCCCTTTTTTTATTTCTATATGATTTACTAACTTCTACTTAGTAGACCCGTACCGGTGTTTCGATTTTCAG
CAATTCAAACACTTTCCGCG

Downstream 100 bases:

>100_bases
CAGAAAAACCCTGTCCATTCCTGAGCATCTCTCCGCTTGCCCTGAAAGACTCAAGCCATTAAAGCTATGCGTGTTTTATG
AACGCATAGCTTTTTTTTTG

Product: photosystem P840 reaction center protein PscD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MQSAVWSGNALHKVTKYYITSAKRDRNGKLDITVSPASGRTNLKPTEKFIDQLKNGEIQLLVLTNQPDIALDMDKKVLDN
ENRYVIDFDKRGVKWTMRDLPVYFNTMKNTLCVEVDGVSYSLDSFFK

Sequences:

>Translated_127_residues
MQSAVWSGNALHKVTKYYITSAKRDRNGKLDITVSPASGRTNLKPTEKFIDQLKNGEIQLLVLTNQPDIALDMDKKVLDN
ENRYVIDFDKRGVKWTMRDLPVYFNTMKNTLCVEVDGVSYSLDSFFK
>Mature_127_residues
MQSAVWSGNALHKVTKYYITSAKRDRNGKLDITVSPASGRTNLKPTEKFIDQLKNGEIQLLVLTNQPDIALDMDKKVLDN
ENRYVIDFDKRGVKWTMRDLPVYFNTMKNTLCVEVDGVSYSLDSFFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019608 [H]

Pfam domain/function: PF10657 RC-P840_PscD [H]

EC number: NA

Molecular weight: Translated: 14568; Mature: 14568

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSAVWSGNALHKVTKYYITSAKRDRNGKLDITVSPASGRTNLKPTEKFIDQLKNGEIQL
CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCEEE
LVLTNQPDIALDMDKKVLDNENRYVIDFDKRGVKWTMRDLPVYFNTMKNTLCVEVDGVSY
EEEECCCCEEEECCCHHHCCCCCEEEEECCCCCEEEECCCCEEEECCCCEEEEEECCCEE
SLDSFFK
CHHHHCC
>Mature Secondary Structure
MQSAVWSGNALHKVTKYYITSAKRDRNGKLDITVSPASGRTNLKPTEKFIDQLKNGEIQL
CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCEEE
LVLTNQPDIALDMDKKVLDNENRYVIDFDKRGVKWTMRDLPVYFNTMKNTLCVEVDGVSY
EEEECCCCEEEECCCHHHCCCCCEEEEECCCCCEEEECCCCEEEECCCCEEEEEECCCEE
SLDSFFK
CHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]