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The map label for this gene is ydiF [H]

Identifier: 194333444

GI number: 194333444

Start: 638968

End: 640923

Strand: Reverse

Name: ydiF [H]

Synonym: Paes_0601

Alternate gene names: 194333444

Gene position: 640923-638968 (Counterclockwise)

Preceding gene: 194333446

Following gene: 194333440

Centisome position: 25.51

GC content: 49.28

Gene sequence:

>1956_bases
ATGTTTGAAGCCCGAAACATCTTCCTCAGCGCAGGAACCAAAGACCTTCTCCAGAACGCATCATTCCGTATCGGAGACCG
GGACCGCGTCTCGCTCGTAGGCCTCAACGGAACAGGAAAATCAACCCTTTTGCGACTCATCAGCCAGGCCGCATCAGGCA
GGACAGCTCTCTCACAAGGTGAATTCACCTGTTCATCGGGTACCACGATAGGCTACCTTCCACAGGAAATATCGTTTGAG
AACGAGCTTGAAACGACAGCATTCCACTATGTGATGCAGGCCAACAAAACCCTCAATGAACTTGCCGAAAAAATCGAGCG
ACTGCAGGAAGACCTTGCCGCACCAGGCCACGACCATGAAAGCAGTCAATACCACCGCCTTATTGAACGCTTCAGTGAAG
CATCCCATGACTTTGAGCGGCTCGGCGGCTATACGATGGAGGGACAGGCTGAAAAAGTACTGACCGGCCTGGGATTCACC
AAAACAGGATTCGAAAAAAAAGTAAAGGAGTTTTCAGGCGGATGGCAGATGCGACTGCTCATTGCCAGACTGCTTCTGCA
GAACCCTACGCTTCTTCTCCTGGATGAACCGACCAACCATCTCGATATCGATTCTCTGCGCTGGCTTGAAAACTACCTGC
TGAACTACGAACACAGTTGTATGATCGTTTCGCATGACCGCTTCTTTCTCGACAAGGTCACGACTCGAACACTGGAGATC
AATTTCAGAACCATAATAGAATACAAGGGCAACTACAGCTATTACGAAAAAGAGAAAGCTGAACGGTTCGAACTCATGAT
GGCTCGCTACGAAAACGACCTGAAAAAGATGGCCCATCTGAAAGACTTTGTCGACAGGTTCCGTGCAAAGGCAACCAAAG
CCAAACAGGCCCAGAGCAGGCTGAGACAGATGCAGAAACTTGAAGAGGAACTCCAGGCTCCCGAAGAGGATAACGCATCG
ATCTCCTTCAGCTTTCCCAAAGCCAGGCCCTCAGGCAAAGAGGTGCTGCGCCTCCAGAACATCTCGAAATCGTGGCAGTT
GCCAGACGGAACAAAAAAACAGGTTCTGCAAGCCATCGATGCAGAAATCATGCGTGGTGACCGTATAGCAATCGTAGGGT
CCAACGGAGCCGGTAAAACCACATTCTGCAGAATCATCGCCGGCGATCTTGACTACGAGGGGACCATGACCACTGGTCAC
AATGTCAGCCTGAACTATTTCGCCCAGCATCAGACAGAACATCTCGATCCCCTGAAAACGATTCTTGAAGAGATGATGAA
CGCCGCACCGGACTCCGAATCACAACGAAAGGTCCGTGACATTCTCGGCTGCTTTCTGTTCAGCGGAGAGTGCGTCGAGA
AAAAAACCGGGGTTCTTTCGGGTGGCGAAAAATCAAGAGTTGCCCTTGCAAAAATTCTGCTCCAGGCATCCAACCTTCTC
ATCATGGACGAACCGACCAATCATCTTGACATGCGTTCCAAGGAGATGCTGATCGATGCGCTTGAAAACTATGACGGAAC
GCTTCTGCTCGTCAGCCATGACCGCTACTTTCTCGATAGTCTTGTCAACAAGGTTATCGAAATAAAAGATGGATCGCTTC
AGCTCTATCTCGGGACCTATGCCGAATATCTCGAAAAAGCTGACAAAGCAGATAAAGCTGCAGAAGAAGAACGCCGAAAA
AAAGCAGCTCAACAGATCCAACGGCCTGTAAAAAGCAAAAAAAACACACACAAAAAGGATAGCACCCCACCGGGCAACAA
CAGCCGGAAAACAGAACGTATCGAAAAAGAGATAACCCGTCTCGAACAACAAAAAAAAGATCTGGAAGCGATCATGGGCG
CCCCTGCATTTTATGAGGAATCGGGAGAAAAAACAGCGGCGACCCTGAAAAAATACGATGGGATCTCAAACGAACTCGAC
AAGCTCTATAAGGAATGGGAAAAGGCCCTCTCATAA

Upstream 100 bases:

>100_bases
TGCATTCTTATCTTACCGCTTTTCATGAATTATTCTATCTTTGAAACAGAAAAATCCATGTTCTGTTTAAACGATCGAAG
CGACAGCGAAACCAACGACT

Downstream 100 bases:

>100_bases
GCCTGCAGGAACTACAGCAACCTCAACCCCAGAACCCCGGCTACAATCAGCAGAATAGAGAGTATCCGGATAAGTTCACG
AGGCTCGTCGAAGAGGAACA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 651; Mature: 651

Protein sequence:

>651_residues
MFEARNIFLSAGTKDLLQNASFRIGDRDRVSLVGLNGTGKSTLLRLISQAASGRTALSQGEFTCSSGTTIGYLPQEISFE
NELETTAFHYVMQANKTLNELAEKIERLQEDLAAPGHDHESSQYHRLIERFSEASHDFERLGGYTMEGQAEKVLTGLGFT
KTGFEKKVKEFSGGWQMRLLIARLLLQNPTLLLLDEPTNHLDIDSLRWLENYLLNYEHSCMIVSHDRFFLDKVTTRTLEI
NFRTIIEYKGNYSYYEKEKAERFELMMARYENDLKKMAHLKDFVDRFRAKATKAKQAQSRLRQMQKLEEELQAPEEDNAS
ISFSFPKARPSGKEVLRLQNISKSWQLPDGTKKQVLQAIDAEIMRGDRIAIVGSNGAGKTTFCRIIAGDLDYEGTMTTGH
NVSLNYFAQHQTEHLDPLKTILEEMMNAAPDSESQRKVRDILGCFLFSGECVEKKTGVLSGGEKSRVALAKILLQASNLL
IMDEPTNHLDMRSKEMLIDALENYDGTLLLVSHDRYFLDSLVNKVIEIKDGSLQLYLGTYAEYLEKADKADKAAEEERRK
KAAQQIQRPVKSKKNTHKKDSTPPGNNSRKTERIEKEITRLEQQKKDLEAIMGAPAFYEESGEKTAATLKKYDGISNELD
KLYKEWEKALS

Sequences:

>Translated_651_residues
MFEARNIFLSAGTKDLLQNASFRIGDRDRVSLVGLNGTGKSTLLRLISQAASGRTALSQGEFTCSSGTTIGYLPQEISFE
NELETTAFHYVMQANKTLNELAEKIERLQEDLAAPGHDHESSQYHRLIERFSEASHDFERLGGYTMEGQAEKVLTGLGFT
KTGFEKKVKEFSGGWQMRLLIARLLLQNPTLLLLDEPTNHLDIDSLRWLENYLLNYEHSCMIVSHDRFFLDKVTTRTLEI
NFRTIIEYKGNYSYYEKEKAERFELMMARYENDLKKMAHLKDFVDRFRAKATKAKQAQSRLRQMQKLEEELQAPEEDNAS
ISFSFPKARPSGKEVLRLQNISKSWQLPDGTKKQVLQAIDAEIMRGDRIAIVGSNGAGKTTFCRIIAGDLDYEGTMTTGH
NVSLNYFAQHQTEHLDPLKTILEEMMNAAPDSESQRKVRDILGCFLFSGECVEKKTGVLSGGEKSRVALAKILLQASNLL
IMDEPTNHLDMRSKEMLIDALENYDGTLLLVSHDRYFLDSLVNKVIEIKDGSLQLYLGTYAEYLEKADKADKAAEEERRK
KAAQQIQRPVKSKKNTHKKDSTPPGNNSRKTERIEKEITRLEQQKKDLEAIMGAPAFYEESGEKTAATLKKYDGISNELD
KLYKEWEKALS
>Mature_651_residues
MFEARNIFLSAGTKDLLQNASFRIGDRDRVSLVGLNGTGKSTLLRLISQAASGRTALSQGEFTCSSGTTIGYLPQEISFE
NELETTAFHYVMQANKTLNELAEKIERLQEDLAAPGHDHESSQYHRLIERFSEASHDFERLGGYTMEGQAEKVLTGLGFT
KTGFEKKVKEFSGGWQMRLLIARLLLQNPTLLLLDEPTNHLDIDSLRWLENYLLNYEHSCMIVSHDRFFLDKVTTRTLEI
NFRTIIEYKGNYSYYEKEKAERFELMMARYENDLKKMAHLKDFVDRFRAKATKAKQAQSRLRQMQKLEEELQAPEEDNAS
ISFSFPKARPSGKEVLRLQNISKSWQLPDGTKKQVLQAIDAEIMRGDRIAIVGSNGAGKTTFCRIIAGDLDYEGTMTTGH
NVSLNYFAQHQTEHLDPLKTILEEMMNAAPDSESQRKVRDILGCFLFSGECVEKKTGVLSGGEKSRVALAKILLQASNLL
IMDEPTNHLDMRSKEMLIDALENYDGTLLLVSHDRYFLDSLVNKVIEIKDGSLQLYLGTYAEYLEKADKADKAAEEERRK
KAAQQIQRPVKSKKNTHKKDSTPPGNNSRKTERIEKEITRLEQQKKDLEAIMGAPAFYEESGEKTAATLKKYDGISNELD
KLYKEWEKALS

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=541, Percent_Identity=31.9778188539741, Blast_Score=274, Evalue=2e-73,
Organism=Homo sapiens, GI10947137, Length=543, Percent_Identity=31.8600368324125, Blast_Score=257, Evalue=3e-68,
Organism=Homo sapiens, GI27881506, Length=543, Percent_Identity=31.8600368324125, Blast_Score=256, Evalue=5e-68,
Organism=Homo sapiens, GI69354671, Length=544, Percent_Identity=30.3308823529412, Blast_Score=211, Evalue=2e-54,
Organism=Homo sapiens, GI10947135, Length=544, Percent_Identity=30.3308823529412, Blast_Score=211, Evalue=2e-54,
Organism=Escherichia coli, GI1789751, Length=617, Percent_Identity=34.0356564019449, Blast_Score=354, Evalue=8e-99,
Organism=Escherichia coli, GI1787041, Length=548, Percent_Identity=33.9416058394161, Blast_Score=305, Evalue=4e-84,
Organism=Escherichia coli, GI1787182, Length=659, Percent_Identity=30.0455235204856, Blast_Score=259, Evalue=3e-70,
Organism=Escherichia coli, GI2367384, Length=545, Percent_Identity=31.5596330275229, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI1787758, Length=260, Percent_Identity=24.2307692307692, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=28.4263959390863, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1788225, Length=209, Percent_Identity=28.7081339712919, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081791, Length=215, Percent_Identity=26.9767441860465, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=26.8181818181818, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1787164, Length=196, Percent_Identity=27.5510204081633, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787105, Length=222, Percent_Identity=29.7297297297297, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081834, Length=227, Percent_Identity=29.0748898678414, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787370, Length=219, Percent_Identity=27.3972602739726, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI87081709, Length=218, Percent_Identity=25.6880733944954, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI1786703, Length=203, Percent_Identity=28.0788177339901, Blast_Score=63, Evalue=7e-11,
Organism=Escherichia coli, GI1787792, Length=247, Percent_Identity=25.5060728744939, Blast_Score=63, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=540, Percent_Identity=33.1481481481482, Blast_Score=265, Evalue=7e-71,
Organism=Caenorhabditis elegans, GI17555318, Length=538, Percent_Identity=31.4126394052045, Blast_Score=245, Evalue=5e-65,
Organism=Caenorhabditis elegans, GI17559834, Length=533, Percent_Identity=29.8311444652908, Blast_Score=238, Evalue=6e-63,
Organism=Saccharomyces cerevisiae, GI6321121, Length=566, Percent_Identity=32.1554770318021, Blast_Score=278, Evalue=1e-75,
Organism=Saccharomyces cerevisiae, GI6320874, Length=556, Percent_Identity=31.4748201438849, Blast_Score=248, Evalue=2e-66,
Organism=Saccharomyces cerevisiae, GI6325030, Length=266, Percent_Identity=29.6992481203008, Blast_Score=121, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6323278, Length=415, Percent_Identity=26.5060240963855, Blast_Score=121, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6324314, Length=287, Percent_Identity=29.9651567944251, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24666836, Length=542, Percent_Identity=34.5018450184502, Blast_Score=304, Evalue=1e-82,
Organism=Drosophila melanogaster, GI24641342, Length=551, Percent_Identity=31.5789473684211, Blast_Score=273, Evalue=3e-73,
Organism=Drosophila melanogaster, GI24642252, Length=553, Percent_Identity=32.0072332730561, Blast_Score=270, Evalue=2e-72,
Organism=Drosophila melanogaster, GI18859989, Length=553, Percent_Identity=32.0072332730561, Blast_Score=270, Evalue=2e-72,
Organism=Drosophila melanogaster, GI45550390, Length=369, Percent_Identity=24.1192411924119, Blast_Score=72, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 74045; Mature: 74045

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEARNIFLSAGTKDLLQNASFRIGDRDRVSLVGLNGTGKSTLLRLISQAASGRTALSQG
CCCCCEEEEECCCHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCC
EFTCSSGTTIGYLPQEISFENELETTAFHYVMQANKTLNELAEKIERLQEDLAAPGHDHE
CEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SSQYHRLIERFSEASHDFERLGGYTMEGQAEKVLTGLGFTKTGFEKKVKEFSGGWQMRLL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
IARLLLQNPTLLLLDEPTNHLDIDSLRWLENYLLNYEHSCMIVSHDRFFLDKVTTRTLEI
HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHEEEEE
NFRTIIEYKGNYSYYEKEKAERFELMMARYENDLKKMAHLKDFVDRFRAKATKAKQAQSR
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRQMQKLEEELQAPEEDNASISFSFPKARPSGKEVLRLQNISKSWQLPDGTKKQVLQAID
HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
AEIMRGDRIAIVGSNGAGKTTFCRIIAGDLDYEGTMTTGHNVSLNYFAQHQTEHLDPLKT
HHHHCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEHHHHCHHCCCHHHH
ILEEMMNAAPDSESQRKVRDILGCFLFSGECVEKKTGVLSGGEKSRVALAKILLQASNLL
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCEE
IMDEPTNHLDMRSKEMLIDALENYDGTLLLVSHDRYFLDSLVNKVIEIKDGSLQLYLGTY
EECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHEECCCCEEEEHHHH
AEYLEKADKADKAAEEERRKKAAQQIQRPVKSKKNTHKKDSTPPGNNSRKTERIEKEITR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
LEQQKKDLEAIMGAPAFYEESGEKTAATLKKYDGISNELDKLYKEWEKALS
HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFEARNIFLSAGTKDLLQNASFRIGDRDRVSLVGLNGTGKSTLLRLISQAASGRTALSQG
CCCCCEEEEECCCHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCC
EFTCSSGTTIGYLPQEISFENELETTAFHYVMQANKTLNELAEKIERLQEDLAAPGHDHE
CEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SSQYHRLIERFSEASHDFERLGGYTMEGQAEKVLTGLGFTKTGFEKKVKEFSGGWQMRLL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
IARLLLQNPTLLLLDEPTNHLDIDSLRWLENYLLNYEHSCMIVSHDRFFLDKVTTRTLEI
HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHEEEEE
NFRTIIEYKGNYSYYEKEKAERFELMMARYENDLKKMAHLKDFVDRFRAKATKAKQAQSR
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRQMQKLEEELQAPEEDNASISFSFPKARPSGKEVLRLQNISKSWQLPDGTKKQVLQAID
HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
AEIMRGDRIAIVGSNGAGKTTFCRIIAGDLDYEGTMTTGHNVSLNYFAQHQTEHLDPLKT
HHHHCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEHHHHCHHCCCHHHH
ILEEMMNAAPDSESQRKVRDILGCFLFSGECVEKKTGVLSGGEKSRVALAKILLQASNLL
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCEE
IMDEPTNHLDMRSKEMLIDALENYDGTLLLVSHDRYFLDSLVNKVIEIKDGSLQLYLGTY
EECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHEECCCCEEEEHHHH
AEYLEKADKADKAAEEERRKKAAQQIQRPVKSKKNTHKKDSTPPGNNSRKTERIEKEITR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
LEQQKKDLEAIMGAPAFYEESGEKTAATLKKYDGISNELDKLYKEWEKALS
HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]