Definition | Prosthecochloris aestuarii DSM 271 chromosome, complete genome. |
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Accession | NC_011059 |
Length | 2,512,923 |
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The map label for this gene is uvrA [H]
Identifier: 194333317
GI number: 194333317
Start: 508018
End: 510858
Strand: Reverse
Name: uvrA [H]
Synonym: Paes_0474
Alternate gene names: 194333317
Gene position: 510858-508018 (Counterclockwise)
Preceding gene: 194333322
Following gene: 194333310
Centisome position: 20.33
GC content: 52.16
Gene sequence:
>2841_bases ATGTCAGCATTCAGTCATATCATCATACGAGGGGCCAGGGTTCACAACCTGAAAAACATCTCCCTCGACATTCCCCGCAA CAGGCTCGTGGTGATCACCGGCCTGTCGGGATCCGGAAAATCCAGTCTGGCATTCGATACCATCTATGCCGAAGGGCAGC GACGTTTCATGGAAACCCTTTCGGCCTATGCGCGTCAGTACATCGGCAATATCGAACGTCCTGATGTGGACAGCATTGAC GGGCTCTCTCCGGTCATATCCATCGACCAGAAAAGCACCAGTCGATCACCCCGTTCGACGGTCGGCACCATTACTGAAAT CCATGATTTTATCCGGCTGCTCTACGCCAAAGCAGGGCGGCGCTACGATCCCGCAACCGGCCATATGTTGCAGAAACAAA GCGAGGAGTTCATTACTGAATCCATCCTCAAGCTGCCCGAAGGAACGAAAGTTCAGCTCCTGGCCCCTCTGGTTACCGGC AGAAAAGGACACTATCGCGAGCTGTTCGATACCCTCCTCAAAAAGGGGTTTCTGCGCATCCGCATCGATGGTGAATTCCG GGAAATGGAAAAAGGGATGCAAATCGAGCGCTACAAGAGCCATACTATCGAACTCGTTGTTGACAGGCTGGTCATTACCT CCGGCGTCAACGAACGTCTGAGGGAGGCTGTCAAACTGGCTGTCGGGATGTCCGAACATAAATCCTCTGTCATCTGCGCT CCGTTTGAAAGCGACGAAAAAGAACAATTTTTCAGCACCAAATACGCCTATTCAGACGGTTCTGTTCCGATCGACACCCT TGCACCCAATAATTTCAGTTTCAACTCTCCCTATGGCGCCTGCCCTGAATGCAACGGCCTCGGCGAGATTCGCCAGTTGT CGGCAGATCTGATGGTCCCCGACAAGTCGCTCTCGATCAATCAGGGAGCGATCGAACCATTCGGCAAACCGGGAAAACGC AATCTCTGGCAGGTCATCAGAGCGATCGCAAAAACATTCAACTTCGATCTCGACACGCCGTTTTCAAAAATCCCGAAAGC CGCTGCCGATATTCTGCTCAATGGTTCCGGAAAAAAAACCTTTGACGTCACCTACAGCTATGCAGGCAAGGAACATCTCT ATCCGCAGGATTTCCCCGGAGCCATCAGCTATGTGCGCGAACTCCAGAAAAACTCAGGAACAGCAAAAATAACTGAATGG GCAGAAAGCTTCATGTTCCGCCAGCCATGTCCGGAGTGCGGCGGAGCCCGTTTGAGAAAAGAAAGCCTGCAGGTTAAAAT CGGTGACAAAAACATCCATGAGCTCGAGTCCATTCCTCTGCCTGAATCACTTCAGCTCTTTCGGGAACTTCCAGCAAAAC TGACGGAGAAGGAAAACCTCATCGCGACCCCGATTCTGCACGAAATCACGAAACGAATAGAGTTCCTGCTCAATGTCGGC CTTGACTACCTGGCACTCAACAGAAGTTCCCAGACCCTCTCCGGCGGCGAAGCACAGCGCATTCGCCTCGCATCACAGCT CGGATCGCAGCTCAGCGGGGTTCTTTACGTGCTTGACGAGCCAAGCATCGGACTGCATCAGCGTGACAACAACAAACTGA TCACATCGCTGCAGCACCTGCGCGATATCGGCAACACCGTTCTCGTGGTTGAGCATGACAAAGACACCATGCTTGCCGCT GATGAGATTATCGATCTCGGACCGGGAGCCGGAGAACATGGCGGCGAGCTTGTCGCTCAGGGACTGGCCGATAAGCTGAA CCCTCATTCTTTAACCGCTCAATACCTGAACGGCCAGCTCGAGGTCTGCACAGAAAAAGCGGACAGAACAGAAGAAAGTG AAAACCGTTTCATCACCCTCCGCGGGTGCCGCGGCAACAATCTGAAAGGGATTGATGTCAGCTTTCCGCTCGCCAGACTG ATCTGCGTCACAGGAGTAAGCGGTTCAGGCAAATCAACCCTGATCAATGAAACACTCTATCCGGTTCTGGCAAGGCACTT CTACCGATCCAAGATTCAGACCTATCCCTACGAAAGTATTGAAGGGCTGAAACTCCTCGACAAGGTCGTCAACGTCGACC AGTCCCCGATAGGCAGGACACCGAGGTCAAACCCTGCGACCTATACCGGAGCGTTTACCTTCATCCGGGACTTTTTCGCC CGCCTTCCTGAAGCCCAGATTCGAGGCTATAAACCAGGACGGTTCAGTTTCAACGTCAAGGGAGGACGCTGTGAAACCTG TCAAGGTGCCGGAACGAAAAAAATCGAGATGAATTTTCTGCCCGATGTCTATGTCGAATGTGATACGTGCAAAGGCAAAC GCTACAACCGCGAAACACTGCAGGTCCGCTACAAGGGAAGTTCCATCGCTGACGTCCTTGATATGACCGTCGAGGAAGCG CTGGGATTCTTTGAAGATTTCCCGCGAATACGCCGTATTCTTTCCACCATGCAGAGTGTCGGGCTCGGCTATATAAAGCT CGGGCAGCAGTCGCCTCTCCTCTCGGGAGGTGAAGCGCAAAGAATAAAACTATCGGCTGAACTAGCCAAAATTCAGACTG GAAATACCCTCTATATCCTTGATGAACCAACTACCGGCCTTCATTTCCAGGACATCCAGCACCTCCTTGACGTTCTGCAG AAACTTGTCGACAAAGGCAACACGGTTATCGTCATCGAACACAATCTCGATATCATCAAAAATGCTGACTGGATCATAGA CCTCGGCCCGGAAGGAGGCAATAAAGGCGGGAACCTGGTCGCTGAAGGAACCCCGGAAGTCATTGCCGCTGCACAATGCT CTCACACAGGAAAATTTCTTGCTGCGGAACTGAAGCCTTGA
Upstream 100 bases:
>100_bases ATCCCTCAAATCACCATACCCACTGACAGATCCCTTACAATGCCTTGCTTTGTTGAGCAAGATTTGATATATACCTCATC TTGCACTCTAAGGGAGCACA
Downstream 100 bases:
>100_bases GCCGCCATCGTCATGAAGCGCCTCATCCAAGATACTTCATCACCCCTGAAACCTCTTCTTCGACCGCATAGGCATCTTTA AACTGCTGAATGCGGGTCAA
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 946; Mature: 945
Protein sequence:
>946_residues MSAFSHIIIRGARVHNLKNISLDIPRNRLVVITGLSGSGKSSLAFDTIYAEGQRRFMETLSAYARQYIGNIERPDVDSID GLSPVISIDQKSTSRSPRSTVGTITEIHDFIRLLYAKAGRRYDPATGHMLQKQSEEFITESILKLPEGTKVQLLAPLVTG RKGHYRELFDTLLKKGFLRIRIDGEFREMEKGMQIERYKSHTIELVVDRLVITSGVNERLREAVKLAVGMSEHKSSVICA PFESDEKEQFFSTKYAYSDGSVPIDTLAPNNFSFNSPYGACPECNGLGEIRQLSADLMVPDKSLSINQGAIEPFGKPGKR NLWQVIRAIAKTFNFDLDTPFSKIPKAAADILLNGSGKKTFDVTYSYAGKEHLYPQDFPGAISYVRELQKNSGTAKITEW AESFMFRQPCPECGGARLRKESLQVKIGDKNIHELESIPLPESLQLFRELPAKLTEKENLIATPILHEITKRIEFLLNVG LDYLALNRSSQTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNNKLITSLQHLRDIGNTVLVVEHDKDTMLAA DEIIDLGPGAGEHGGELVAQGLADKLNPHSLTAQYLNGQLEVCTEKADRTEESENRFITLRGCRGNNLKGIDVSFPLARL ICVTGVSGSGKSTLINETLYPVLARHFYRSKIQTYPYESIEGLKLLDKVVNVDQSPIGRTPRSNPATYTGAFTFIRDFFA RLPEAQIRGYKPGRFSFNVKGGRCETCQGAGTKKIEMNFLPDVYVECDTCKGKRYNRETLQVRYKGSSIADVLDMTVEEA LGFFEDFPRIRRILSTMQSVGLGYIKLGQQSPLLSGGEAQRIKLSAELAKIQTGNTLYILDEPTTGLHFQDIQHLLDVLQ KLVDKGNTVIVIEHNLDIIKNADWIIDLGPEGGNKGGNLVAEGTPEVIAAAQCSHTGKFLAAELKP
Sequences:
>Translated_946_residues MSAFSHIIIRGARVHNLKNISLDIPRNRLVVITGLSGSGKSSLAFDTIYAEGQRRFMETLSAYARQYIGNIERPDVDSID GLSPVISIDQKSTSRSPRSTVGTITEIHDFIRLLYAKAGRRYDPATGHMLQKQSEEFITESILKLPEGTKVQLLAPLVTG RKGHYRELFDTLLKKGFLRIRIDGEFREMEKGMQIERYKSHTIELVVDRLVITSGVNERLREAVKLAVGMSEHKSSVICA PFESDEKEQFFSTKYAYSDGSVPIDTLAPNNFSFNSPYGACPECNGLGEIRQLSADLMVPDKSLSINQGAIEPFGKPGKR NLWQVIRAIAKTFNFDLDTPFSKIPKAAADILLNGSGKKTFDVTYSYAGKEHLYPQDFPGAISYVRELQKNSGTAKITEW AESFMFRQPCPECGGARLRKESLQVKIGDKNIHELESIPLPESLQLFRELPAKLTEKENLIATPILHEITKRIEFLLNVG LDYLALNRSSQTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNNKLITSLQHLRDIGNTVLVVEHDKDTMLAA DEIIDLGPGAGEHGGELVAQGLADKLNPHSLTAQYLNGQLEVCTEKADRTEESENRFITLRGCRGNNLKGIDVSFPLARL ICVTGVSGSGKSTLINETLYPVLARHFYRSKIQTYPYESIEGLKLLDKVVNVDQSPIGRTPRSNPATYTGAFTFIRDFFA RLPEAQIRGYKPGRFSFNVKGGRCETCQGAGTKKIEMNFLPDVYVECDTCKGKRYNRETLQVRYKGSSIADVLDMTVEEA LGFFEDFPRIRRILSTMQSVGLGYIKLGQQSPLLSGGEAQRIKLSAELAKIQTGNTLYILDEPTTGLHFQDIQHLLDVLQ KLVDKGNTVIVIEHNLDIIKNADWIIDLGPEGGNKGGNLVAEGTPEVIAAAQCSHTGKFLAAELKP >Mature_945_residues SAFSHIIIRGARVHNLKNISLDIPRNRLVVITGLSGSGKSSLAFDTIYAEGQRRFMETLSAYARQYIGNIERPDVDSIDG LSPVISIDQKSTSRSPRSTVGTITEIHDFIRLLYAKAGRRYDPATGHMLQKQSEEFITESILKLPEGTKVQLLAPLVTGR KGHYRELFDTLLKKGFLRIRIDGEFREMEKGMQIERYKSHTIELVVDRLVITSGVNERLREAVKLAVGMSEHKSSVICAP FESDEKEQFFSTKYAYSDGSVPIDTLAPNNFSFNSPYGACPECNGLGEIRQLSADLMVPDKSLSINQGAIEPFGKPGKRN LWQVIRAIAKTFNFDLDTPFSKIPKAAADILLNGSGKKTFDVTYSYAGKEHLYPQDFPGAISYVRELQKNSGTAKITEWA ESFMFRQPCPECGGARLRKESLQVKIGDKNIHELESIPLPESLQLFRELPAKLTEKENLIATPILHEITKRIEFLLNVGL DYLALNRSSQTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNNKLITSLQHLRDIGNTVLVVEHDKDTMLAAD EIIDLGPGAGEHGGELVAQGLADKLNPHSLTAQYLNGQLEVCTEKADRTEESENRFITLRGCRGNNLKGIDVSFPLARLI CVTGVSGSGKSTLINETLYPVLARHFYRSKIQTYPYESIEGLKLLDKVVNVDQSPIGRTPRSNPATYTGAFTFIRDFFAR LPEAQIRGYKPGRFSFNVKGGRCETCQGAGTKKIEMNFLPDVYVECDTCKGKRYNRETLQVRYKGSSIADVLDMTVEEAL GFFEDFPRIRRILSTMQSVGLGYIKLGQQSPLLSGGEAQRIKLSAELAKIQTGNTLYILDEPTTGLHFQDIQHLLDVLQK LVDKGNTVIVIEHNLDIIKNADWIIDLGPEGGNKGGNLVAEGTPEVIAAAQCSHTGKFLAAELKP
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=944, Percent_Identity=50.5296610169492, Blast_Score=941, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104904; Mature: 104773
Theoretical pI: Translated: 7.57; Mature: 7.57
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAFSHIIIRGARVHNLKNISLDIPRNRLVVITGLSGSGKSSLAFDTIYAEGQRRFMETL CCCHHHHHHCCHHHCCCCEEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHH SAYARQYIGNIERPDVDSIDGLSPVISIDQKSTSRSPRSTVGTITEIHDFIRLLYAKAGR HHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC RYDPATGHMLQKQSEEFITESILKLPEGTKVQLLAPLVTGRKGHYRELFDTLLKKGFLRI CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHCCEEEE RIDGEFREMEKGMQIERYKSHTIELVVDRLVITSGVNERLREAVKLAVGMSEHKSSVICA EECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEE PFESDEKEQFFSTKYAYSDGSVPIDTLAPNNFSFNSPYGACPECNGLGEIRQLSADLMVP CCCCCCHHHHHHHHEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC DKSLSINQGAIEPFGKPGKRNLWQVIRAIAKTFNFDLDTPFSKIPKAAADILLNGSGKKT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHEEECCCCCEE FDVTYSYAGKEHLYPQDFPGAISYVRELQKNSGTAKITEWAESFMFRQPCPECGGARLRK EEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEC ESLQVKIGDKNIHELESIPLPESLQLFRELPAKLTEKENLIATPILHEITKRIEFLLNVG CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCC LDYLALNRSSQTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNNKLITSLQHL CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCEECCCCHHHHHHHHH RDIGNTVLVVEHDKDTMLAADEIIDLGPGAGEHGGELVAQGLADKLNPHSLTAQYLNGQL HHCCCEEEEEECCCCCEEEHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCC EVCTEKADRTEESENRFITLRGCRGNNLKGIDVSFPLARLICVTGVSGSGKSTLINETLY EEHHHHHCCCCCCCCCEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCCCCHHHHHHHH PVLARHFYRSKIQTYPYESIEGLKLLDKVVNVDQSPIGRTPRSNPATYTGAFTFIRDFFA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH RLPEAQIRGYKPGRFSFNVKGGRCETCQGAGTKKIEMNFLPDVYVECDTCKGKRYNRETL HCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEE QVRYKGSSIADVLDMTVEEALGFFEDFPRIRRILSTMQSVGLGYIKLGQQSPLLSGGEAQ EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC RIKLSAELAKIQTGNTLYILDEPTTGLHFQDIQHLLDVLQKLVDKGNTVIVIEHNLDIIK EEEEEEHHHEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEE NADWIIDLGPEGGNKGGNLVAEGTPEVIAAAQCSHTGKFLAAELKP CCCEEEEECCCCCCCCCCEEECCCCHHEEHHHHCCCCCEEEECCCC >Mature Secondary Structure SAFSHIIIRGARVHNLKNISLDIPRNRLVVITGLSGSGKSSLAFDTIYAEGQRRFMETL CCHHHHHHCCHHHCCCCEEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHH SAYARQYIGNIERPDVDSIDGLSPVISIDQKSTSRSPRSTVGTITEIHDFIRLLYAKAGR HHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC RYDPATGHMLQKQSEEFITESILKLPEGTKVQLLAPLVTGRKGHYRELFDTLLKKGFLRI CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHCCEEEE RIDGEFREMEKGMQIERYKSHTIELVVDRLVITSGVNERLREAVKLAVGMSEHKSSVICA EECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEE PFESDEKEQFFSTKYAYSDGSVPIDTLAPNNFSFNSPYGACPECNGLGEIRQLSADLMVP CCCCCCHHHHHHHHEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC DKSLSINQGAIEPFGKPGKRNLWQVIRAIAKTFNFDLDTPFSKIPKAAADILLNGSGKKT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHEEECCCCCEE FDVTYSYAGKEHLYPQDFPGAISYVRELQKNSGTAKITEWAESFMFRQPCPECGGARLRK EEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEC ESLQVKIGDKNIHELESIPLPESLQLFRELPAKLTEKENLIATPILHEITKRIEFLLNVG CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCC LDYLALNRSSQTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNNKLITSLQHL CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCEECCCCHHHHHHHHH RDIGNTVLVVEHDKDTMLAADEIIDLGPGAGEHGGELVAQGLADKLNPHSLTAQYLNGQL HHCCCEEEEEECCCCCEEEHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCC EVCTEKADRTEESENRFITLRGCRGNNLKGIDVSFPLARLICVTGVSGSGKSTLINETLY EEHHHHHCCCCCCCCCEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCCCCHHHHHHHH PVLARHFYRSKIQTYPYESIEGLKLLDKVVNVDQSPIGRTPRSNPATYTGAFTFIRDFFA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH RLPEAQIRGYKPGRFSFNVKGGRCETCQGAGTKKIEMNFLPDVYVECDTCKGKRYNRETL HCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEE QVRYKGSSIADVLDMTVEEALGFFEDFPRIRRILSTMQSVGLGYIKLGQQSPLLSGGEAQ EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC RIKLSAELAKIQTGNTLYILDEPTTGLHFQDIQHLLDVLQKLVDKGNTVIVIEHNLDIIK EEEEEEHHHEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEE NADWIIDLGPEGGNKGGNLVAEGTPEVIAAAQCSHTGKFLAAELKP CCCEEEEECCCCCCCCCCEEECCCCHHEEHHHHCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8675016 [H]