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The map label for this gene is rpoE [H]

Identifier: 194333253

GI number: 194333253

Start: 445153

End: 445770

Strand: Reverse

Name: rpoE [H]

Synonym: Paes_0409

Alternate gene names: 194333253

Gene position: 445770-445153 (Counterclockwise)

Preceding gene: 194333254

Following gene: 194333252

Centisome position: 17.74

GC content: 44.98

Gene sequence:

>618_bases
ATGATGCATGATGTCTGTCAAACCTCTCTACCTGTACATAGCAACACCGTGACATTGCAGAAAACCGGTCAGTCCAACTC
AGAAGAGTCGTTCAGTGCCCTCGTAGCAGAGCACCAGAATATGGTTATCAACACCTGTTACCGGTTTGTACTCAACAGGG
AGGATGCTGAAGATATTGCCCAGGAAGTATTTATCGAAGCGTATCGCTCTCTCGAAAGATTCAGAAATGAATCGAAACTC
TCGACATGGCTCTACCGTATCGCTGTAACAAAATCACTTGATCACCTCCGCAAAAAGAAGCGCAAAAAACGGTTTTCGTC
GTTGAAACGCATGATCGGTCAAGAAGATCCCATACAGGAAATAGCTCTTCCCGACAACGATACCCCATCGGATCTCTGCC
TCGAACAAGAACGGGTAAAGGTGCTTCAGAATGCCCTTGACAGCCTCCCGGACAATCAGAAAACGGCATTTCTTCTCAGC
AAAAGCGATGGATATAGCAATCAGGAAATAGCTGATATCATGCAGACCTCAGTATCGGCAATCGAATCTCTTATACACAG
GGCTAAAAAAAACCTTCAGAAAAAGCTTGAAAAACACTACTCCGCAGAAAAGGCATAA

Upstream 100 bases:

>100_bases
CAGGCGCAAGAATGTTCAGACATCAACGTCCTATATAAGGTACTCTGCTGTTGTCAACGATGAATAACATTTGGCTGTAG
TCAACCGGAAAGCCATTATC

Downstream 100 bases:

>100_bases
TCCACAGAGTGCGCAAGGTTTTCGGCTGACAAGCGTCAAAACTGTTACGATCAACAAAAACATAGCATTATGATGCAGAA
AAGGGATAAGCGCATAGACG

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MMHDVCQTSLPVHSNTVTLQKTGQSNSEESFSALVAEHQNMVINTCYRFVLNREDAEDIAQEVFIEAYRSLERFRNESKL
STWLYRIAVTKSLDHLRKKKRKKRFSSLKRMIGQEDPIQEIALPDNDTPSDLCLEQERVKVLQNALDSLPDNQKTAFLLS
KSDGYSNQEIADIMQTSVSAIESLIHRAKKNLQKKLEKHYSAEKA

Sequences:

>Translated_205_residues
MMHDVCQTSLPVHSNTVTLQKTGQSNSEESFSALVAEHQNMVINTCYRFVLNREDAEDIAQEVFIEAYRSLERFRNESKL
STWLYRIAVTKSLDHLRKKKRKKRFSSLKRMIGQEDPIQEIALPDNDTPSDLCLEQERVKVLQNALDSLPDNQKTAFLLS
KSDGYSNQEIADIMQTSVSAIESLIHRAKKNLQKKLEKHYSAEKA
>Mature_205_residues
MMHDVCQTSLPVHSNTVTLQKTGQSNSEESFSALVAEHQNMVINTCYRFVLNREDAEDIAQEVFIEAYRSLERFRNESKL
STWLYRIAVTKSLDHLRKKKRKKRFSSLKRMIGQEDPIQEIALPDNDTPSDLCLEQERVKVLQNALDSLPDNQKTAFLLS
KSDGYSNQEIADIMQTSVSAIESLIHRAKKNLQKKLEKHYSAEKA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=174, Percent_Identity=33.9080459770115, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23573; Mature: 23573

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHDVCQTSLPVHSNTVTLQKTGQSNSEESFSALVAEHQNMVINTCYRFVLNREDAEDIA
CCCHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QEVFIEAYRSLERFRNESKLSTWLYRIAVTKSLDHLRKKKRKKRFSSLKRMIGQEDPIQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
IALPDNDTPSDLCLEQERVKVLQNALDSLPDNQKTAFLLSKSDGYSNQEIADIMQTSVSA
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
IESLIHRAKKNLQKKLEKHYSAEKA
HHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMHDVCQTSLPVHSNTVTLQKTGQSNSEESFSALVAEHQNMVINTCYRFVLNREDAEDIA
CCCHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QEVFIEAYRSLERFRNESKLSTWLYRIAVTKSLDHLRKKKRKKRFSSLKRMIGQEDPIQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
IALPDNDTPSDLCLEQERVKVLQNALDSLPDNQKTAFLLSKSDGYSNQEIADIMQTSVSA
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
IESLIHRAKKNLQKKLEKHYSAEKA
HHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]