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The map label for this gene is fni [H]

Identifier: 194333228

GI number: 194333228

Start: 415837

End: 416910

Strand: Reverse

Name: fni [H]

Synonym: Paes_0384

Alternate gene names: 194333228

Gene position: 416910-415837 (Counterclockwise)

Preceding gene: 194333238

Following gene: 194333227

Centisome position: 16.59

GC content: 51.21

Gene sequence:

>1074_bases
ATGAACCAGACAGAACATCTAACCGCCGAACGCAAACATCATCATGTCGAAATCTGTCTGCATGACGATGTCCGATTCAG
CGGCAAAACAACCGGCTTTGAACACATCGAGCTGGAACATAACGCCGTTCCGGAGATCAACTTCTCGGAGATTGATCTGG
CAACGACGTTTTTAGGCCACAGGATCAACTATCCCTTCATGATCTCCTCCATGACCGGAGGCTACACCAAAGCCGCCGAC
CTCAACAGGAGCATAGCCGAAACATCAGAGAAGCTGAAAATACCGCTCGGCGTGGGAAGCATGAGACAGGCTCTGGAAAA
CGACAATTTCAGACAAAGCTTCAGTATCGTTCGCCAGGCTGCCCCGTCAATACCGGTGCTGGCAAATATCGGCGCGCCTG
AGATCGCCGGAGGAGTCTCCAAACAGGATATTCTATCCCTCATCGACATGGTCGCTGCCGATGCCCTGATCGTTCACCTC
AATCCTGCACAGGAGCTTTTTCAACCGGAAGGAAACACCGACTTCAGTCATTTCCTCAACAATCTCGAGGAAATAGGTTC
GGCACTCCCGATACCGATTATTGCAAAAGAGGTCGGTTGCGGCATTTCAGCTGAAACAGCAAAAAAACTGATCGATGCAG
GTGCTGCCGTAATCGATGTGGCCGGCGCAGGCGGACTCAGCTGGCAGAAAGTAGAAGAGGTCCGTTATCTGCGACAGTTC
GGAGAGGACCGGCGTTTCAGTCCTTCAGCCCTTGATACGCTGCTCAACTGGGGCATCCCAACCTCACGCTGCCTTGCCGA
TATCGCAGCAATGAAGCGGCGGGAACCTCGCTATGAACCGATCGAAATCATAGCTTCCGGAGGCATTGCCAACGGTATCG
ATATAGCCAAAGCTATCGCTCTCGGTGCAGATATTGCCGCATCAGCAGGAATGATGCTCAAAGCCCTGCACCATAATATT
CTTGAACAAACGATCCTTACCTGGATGAATGATCTGAAAGCGGCTATGTTTCTTACCGGATCACGAACCATAAGGGATTT
ACAACAAACCAGGACCATTATACACCATGGCTAG

Upstream 100 bases:

>100_bases
AAACATCAGTAGCGCGCAATAAAAAGATTATTGCGATATATTATTAAGTTATACATTTTACACAGCAGGAAAAACCTCAA
CAGTGTCGCCAAAAGGCTTC

Downstream 100 bases:

>100_bases
TTCAGCAATACAGATCGGTCTGACTCAGGATCAGGTAGAAACCAAATACAAAGAGTACCACAAGCGAATCAACGATGCGC
TTGCCGGATGCTTTACCAAA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MNQTEHLTAERKHHHVEICLHDDVRFSGKTTGFEHIELEHNAVPEINFSEIDLATTFLGHRINYPFMISSMTGGYTKAAD
LNRSIAETSEKLKIPLGVGSMRQALENDNFRQSFSIVRQAAPSIPVLANIGAPEIAGGVSKQDILSLIDMVAADALIVHL
NPAQELFQPEGNTDFSHFLNNLEEIGSALPIPIIAKEVGCGISAETAKKLIDAGAAVIDVAGAGGLSWQKVEEVRYLRQF
GEDRRFSPSALDTLLNWGIPTSRCLADIAAMKRREPRYEPIEIIASGGIANGIDIAKAIALGADIAASAGMMLKALHHNI
LEQTILTWMNDLKAAMFLTGSRTIRDLQQTRTIIHHG

Sequences:

>Translated_357_residues
MNQTEHLTAERKHHHVEICLHDDVRFSGKTTGFEHIELEHNAVPEINFSEIDLATTFLGHRINYPFMISSMTGGYTKAAD
LNRSIAETSEKLKIPLGVGSMRQALENDNFRQSFSIVRQAAPSIPVLANIGAPEIAGGVSKQDILSLIDMVAADALIVHL
NPAQELFQPEGNTDFSHFLNNLEEIGSALPIPIIAKEVGCGISAETAKKLIDAGAAVIDVAGAGGLSWQKVEEVRYLRQF
GEDRRFSPSALDTLLNWGIPTSRCLADIAAMKRREPRYEPIEIIASGGIANGIDIAKAIALGADIAASAGMMLKALHHNI
LEQTILTWMNDLKAAMFLTGSRTIRDLQQTRTIIHHG
>Mature_357_residues
MNQTEHLTAERKHHHVEICLHDDVRFSGKTTGFEHIELEHNAVPEINFSEIDLATTFLGHRINYPFMISSMTGGYTKAAD
LNRSIAETSEKLKIPLGVGSMRQALENDNFRQSFSIVRQAAPSIPVLANIGAPEIAGGVSKQDILSLIDMVAADALIVHL
NPAQELFQPEGNTDFSHFLNNLEEIGSALPIPIIAKEVGCGISAETAKKLIDAGAAVIDVAGAGGLSWQKVEEVRYLRQF
GEDRRFSPSALDTLLNWGIPTSRCLADIAAMKRREPRYEPIEIIASGGIANGIDIAKAIALGADIAASAGMMLKALHHNI
LEQTILTWMNDLKAAMFLTGSRTIRDLQQTRTIIHHG

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 38913; Mature: 38913

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS00855 SPASE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQTEHLTAERKHHHVEICLHDDVRFSGKTTGFEHIELEHNAVPEINFSEIDLATTFLGH
CCCCHHHHHHCCCCEEEEEEECCEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
RINYPFMISSMTGGYTKAADLNRSIAETSEKLKIPLGVGSMRQALENDNFRQSFSIVRQA
CCCCCEEEECCCCCCCHHHHHHHHHHHCHHHEEEECCCHHHHHHHCCCCHHHHHHHHHHH
APSIPVLANIGAPEIAGGVSKQDILSLIDMVAADALIVHLNPAQELFQPEGNTDFSHFLN
CCCCCEEECCCCCHHHCCCCHHHHHHHHHHHHHCEEEEEECCHHHHHCCCCCCCHHHHHH
NLEEIGSALPIPIIAKEVGCGISAETAKKLIDAGAAVIDVAGAGGLSWQKVEEVRYLRQF
HHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
GEDRRFSPSALDTLLNWGIPTSRCLADIAAMKRREPRYEPIEIIASGGIANGIDIAKAIA
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHH
LGADIAASAGMMLKALHHNILEQTILTWMNDLKAAMFLTGSRTIRDLQQTRTIIHHG
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQTEHLTAERKHHHVEICLHDDVRFSGKTTGFEHIELEHNAVPEINFSEIDLATTFLGH
CCCCHHHHHHCCCCEEEEEEECCEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
RINYPFMISSMTGGYTKAADLNRSIAETSEKLKIPLGVGSMRQALENDNFRQSFSIVRQA
CCCCCEEEECCCCCCCHHHHHHHHHHHCHHHEEEECCCHHHHHHHCCCCHHHHHHHHHHH
APSIPVLANIGAPEIAGGVSKQDILSLIDMVAADALIVHLNPAQELFQPEGNTDFSHFLN
CCCCCEEECCCCCHHHCCCCHHHHHHHHHHHHHCEEEEEECCHHHHHCCCCCCCHHHHHH
NLEEIGSALPIPIIAKEVGCGISAETAKKLIDAGAAVIDVAGAGGLSWQKVEEVRYLRQF
HHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
GEDRRFSPSALDTLLNWGIPTSRCLADIAAMKRREPRYEPIEIIASGGIANGIDIAKAIA
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHH
LGADIAASAGMMLKALHHNILEQTILTWMNDLKAAMFLTGSRTIRDLQQTRTIIHHG
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA