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The map label for this gene is rlpA [C]

Identifier: 194333064

GI number: 194333064

Start: 231702

End: 232193

Strand: Reverse

Name: rlpA [C]

Synonym: Paes_0220

Alternate gene names: 194333064

Gene position: 232193-231702 (Counterclockwise)

Preceding gene: 194333068

Following gene: 194333059

Centisome position: 9.24

GC content: 50.41

Gene sequence:

>492_bases
ATGGTCATCATGCTTGCACAGCTGACAGGCTGCCAGACAAGCTCAACATATACATCGCTGCAATCAGGCATTCCCGTCAC
AGGCCTCAGTCCCGCCTGCGACCAAACCCCTGACCCTAAGGACAATGAGCTTTCATGCGATGAGAACGCCGAAGACCTCG
GGACCCTCTGTATGGTCATTGAAGGCAAAGCCTCATACTATGCCGACAGATTTCACGGACGTCTTACCGCCAACGGCGAA
CGATTTAATATGCATGAGATGACCGCTGCACATAAATCACTCCCGTTCGGCTCGATGGTCAGGGTTACGAACCTCACCAA
CGGAAAAAAAGTAGTTGTCAGAATAAACGACAGAGGCCCTTACATCAAAGGTAGAATTATCGACCTCTCAAAGGGCGCAG
CAAAAGAGATCGGCCTCATCAAAAAAGGGGTCAGCAAAGTGAAGCTTGAAGTCTATGACGGCAGCGATACCGGTGAGTCG
CAGACATCATAA

Upstream 100 bases:

>100_bases
CCCCTGCTCTTCTCTCCAGACACAATTGATATCGAAAGAACAGGGGTAATCAAATAATAAGAGAATGAAGACAAGACGTA
TACCCTTCCTTCCATTGATC

Downstream 100 bases:

>100_bases
CAACCCACAGGCTGCAACAGAGCCACAAAAGCCCGCTTATGAAGCGGGCTTTTTGCATTGCATCCCTTGCGTAAGATCAA
GCTACTCGTTTTCGCGCCTT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MVIMLAQLTGCQTSSTYTSLQSGIPVTGLSPACDQTPDPKDNELSCDENAEDLGTLCMVIEGKASYYADRFHGRLTANGE
RFNMHEMTAAHKSLPFGSMVRVTNLTNGKKVVVRINDRGPYIKGRIIDLSKGAAKEIGLIKKGVSKVKLEVYDGSDTGES
QTS

Sequences:

>Translated_163_residues
MVIMLAQLTGCQTSSTYTSLQSGIPVTGLSPACDQTPDPKDNELSCDENAEDLGTLCMVIEGKASYYADRFHGRLTANGE
RFNMHEMTAAHKSLPFGSMVRVTNLTNGKKVVVRINDRGPYIKGRIIDLSKGAAKEIGLIKKGVSKVKLEVYDGSDTGES
QTS
>Mature_163_residues
MVIMLAQLTGCQTSSTYTSLQSGIPVTGLSPACDQTPDPKDNELSCDENAEDLGTLCMVIEGKASYYADRFHGRLTANGE
RFNMHEMTAAHKSLPFGSMVRVTNLTNGKKVVVRINDRGPYIKGRIIDLSKGAAKEIGLIKKGVSKVKLEVYDGSDTGES
QTS

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=101, Percent_Identity=43.5643564356436, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 17590; Mature: 17590

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIMLAQLTGCQTSSTYTSLQSGIPVTGLSPACDQTPDPKDNELSCDENAEDLGTLCMVI
CEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCEEEEEE
EGKASYYADRFHGRLTANGERFNMHEMTAAHKSLPFGSMVRVTNLTNGKKVVVRINDRGP
ECCHHHHHHHHCCEEEECCCEECHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCC
YIKGRIIDLSKGAAKEIGLIKKGVSKVKLEVYDGSDTGESQTS
EEEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MVIMLAQLTGCQTSSTYTSLQSGIPVTGLSPACDQTPDPKDNELSCDENAEDLGTLCMVI
CEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCEEEEEE
EGKASYYADRFHGRLTANGERFNMHEMTAAHKSLPFGSMVRVTNLTNGKKVVVRINDRGP
ECCHHHHHHHHCCEEEECCCEECHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCC
YIKGRIIDLSKGAAKEIGLIKKGVSKVKLEVYDGSDTGESQTS
EEEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]