Click here to switch to the map view.

The map label for this gene is rnhB [H]

Identifier: 194332870

GI number: 194332870

Start: 19959

End: 20579

Strand: Reverse

Name: rnhB [H]

Synonym: Paes_0017

Alternate gene names: 194332870

Gene position: 20579-19959 (Counterclockwise)

Preceding gene: 194332875

Following gene: 194332869

Centisome position: 0.82

GC content: 52.98

Gene sequence:

>621_bases
TTGACTTTAACAACCCTGTACGAACAACAATTCTGGCCTGATCTGCAAAGAGTTTGCGGCATCGACGAAGCTGGCAGAGG
ACCGCTCGCAGGACCTGTCGTCGCTGCGGCGGTGGTCTTTCCGCGCCATTTTCGACCTCATGGCTTTATCTCGACGCTGA
ACGACTCCAAAACAATCCCGCCACGAAGACGCAAAGAGCTTGCTCAGGCAATTATTCAGGAAGCAGAAGACTACGCCATA
GCGGAAGTTGACCATATCGAGATAGACCGGATCAATATTCTGCAGGCAACCATGCTTGCCATGAACAATGCCGCCGGCTC
ACTCGAACACAGCCCGTCACTGCTGCTGATCGACGGAAACCGCTTTCATCCGGCAAGGCCTGTTGCATTCAGAACGATAG
TGAAAGGAGATGCTTCGGTCTTTTCTATCGCGGCAGCATCGATCCTGGCAAAGACACACCGAGACGCCATCATGACAGAA
GCCGCACTGCTCTACCCGGAGTACGGTTTCGAAAAACATTTCGGCTACCCGACCAGAGAACATATCGAAGCCATAAGAAA
CCATGGACGCTCTCCGATCCACAGGATGAGCTTCCGGCTCCGCCAGCTCGGAGAAAAATAA

Upstream 100 bases:

>100_bases
AATTTCATCGAAATGCGCAAGCATTCTATGAAATGTAACCTGTATTATTTAACATTTTTGATAAAAGCGCAAATTTTCAT
CATTTTCGCACCCCGTTTCA

Downstream 100 bases:

>100_bases
CCCCGCAGAAAACTATGTCACTCATCCCCCATGACCTTGGACGACAGGGAGAAGATGCAGCAGCATCATGGCTGCTCTGC
AAAGGGTACCGTATTATCCG

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTLTTLYEQQFWPDLQRVCGIDEAGRGPLAGPVVAAAVVFPRHFRPHGFISTLNDSKTIPPRRRKELAQAIIQEAEDYAI
AEVDHIEIDRINILQATMLAMNNAAGSLEHSPSLLLIDGNRFHPARPVAFRTIVKGDASVFSIAAASILAKTHRDAIMTE
AALLYPEYGFEKHFGYPTREHIEAIRNHGRSPIHRMSFRLRQLGEK

Sequences:

>Translated_206_residues
MTLTTLYEQQFWPDLQRVCGIDEAGRGPLAGPVVAAAVVFPRHFRPHGFISTLNDSKTIPPRRRKELAQAIIQEAEDYAI
AEVDHIEIDRINILQATMLAMNNAAGSLEHSPSLLLIDGNRFHPARPVAFRTIVKGDASVFSIAAASILAKTHRDAIMTE
AALLYPEYGFEKHFGYPTREHIEAIRNHGRSPIHRMSFRLRQLGEK
>Mature_205_residues
TLTTLYEQQFWPDLQRVCGIDEAGRGPLAGPVVAAAVVFPRHFRPHGFISTLNDSKTIPPRRRKELAQAIIQEAEDYAIA
EVDHIEIDRINILQATMLAMNNAAGSLEHSPSLLLIDGNRFHPARPVAFRTIVKGDASVFSIAAASILAKTHRDAIMTEA
ALLYPEYGFEKHFGYPTREHIEAIRNHGRSPIHRMSFRLRQLGEK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=187, Percent_Identity=45.9893048128342, Blast_Score=154, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 23087; Mature: 22956

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTTLYEQQFWPDLQRVCGIDEAGRGPLAGPVVAAAVVFPRHFRPHGFISTLNDSKTIP
CCCHHHHHHHHCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
PRRRKELAQAIIQEAEDYAIAEVDHIEIDRINILQATMLAMNNAAGSLEHSPSLLLIDGN
CHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
RFHPARPVAFRTIVKGDASVFSIAAASILAKTHRDAIMTEAALLYPEYGFEKHFGYPTRE
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHH
HIEAIRNHGRSPIHRMSFRLRQLGEK
HHHHHHHCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLTTLYEQQFWPDLQRVCGIDEAGRGPLAGPVVAAAVVFPRHFRPHGFISTLNDSKTIP
CCHHHHHHHHCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
PRRRKELAQAIIQEAEDYAIAEVDHIEIDRINILQATMLAMNNAAGSLEHSPSLLLIDGN
CHHHHHHHHHHHHHHHCCCEEECCCEEECHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
RFHPARPVAFRTIVKGDASVFSIAAASILAKTHRDAIMTEAALLYPEYGFEKHFGYPTRE
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHH
HIEAIRNHGRSPIHRMSFRLRQLGEK
HHHHHHHCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA