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The map label for this gene is 193213613

Identifier: 193213613

GI number: 193213613

Start: 2180092

End: 2180784

Strand: Direct

Name: 193213613

Synonym: Cpar_1977

Alternate gene names: NA

Gene position: 2180092-2180784 (Clockwise)

Preceding gene: 193213612

Following gene: 193213614

Centisome position: 95.23

GC content: 51.37

Gene sequence:

>693_bases
ATGATTTACGTAGTACCAATCCACCACAACCAAATGGAAACAGCTATGAAAAAGATCACAAGAATGGCAACGCTTGGCGT
GTTCCTGCTCGCAGGCGTTAGCGGCACAGCACTTGCCAACGGAACGAGCGCCCCTGAGCCCGAACCAATGCGCTACATGC
CTCCTCCGCCACCACCGGCTCCCGCTCCTGCACCAGTTGTAGACACCTGCGAGCCTGGAGCGTATATCAGTGGATCGATC
GGCATCGGCATCCCTGAAAAGTCCAATTTTGACGGCTACAAGTATGAGATGGAGACCGGCCTCGCACTGAATGGTGCAAT
CGGGTATGATTTCGGAGATACCAGACTTGAAGCCGCTGTAGGCTATCAGAAACATGATTTTAAGAACTATGATGACGATC
TTTCTCTGCTAACCGTCATGGCTAACGCCTATTATGACATCGACACAGGTTCAGACATCACACCTTACCTGATGGCTGGT
GCTGGCTGGGCACATGTCGACTCTTCCTGGGATGAGAGTGATGACGTCTTTGCATGGCAGGTCGGTGCAGGGCTTGGCTT
TAAAGTCGCCGACTGCACAACGCTTGACTTGGGATACCGCTACCTGAGGCCGAATAAATTCGATCTTGGTGAAGGTGATA
ATACCAAATGGGCTGTTCACAACATCATGCTTGGGCTCAGGTATAACTTCTGA

Upstream 100 bases:

>100_bases
TCATTGAAAACACCCTGTCATTTTTACTAAACCATTACAAAAGAACCTGTTTTCAAAAAGTGCTCAAAAGAACACAGAGA
CCTCTTACAACAGATTCTCA

Downstream 100 bases:

>100_bases
TGCAAGCAAAATCGATCATCGCAAAAAAACCGGAGGCAGCGATTGCTTCCGGTTTTTTGTTACGCCCTCTACGCGTTTTC
GCGACCTGAATGATGAGTGC

Product: porin opacity type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MIYVVPIHHNQMETAMKKITRMATLGVFLLAGVSGTALANGTSAPEPEPMRYMPPPPPPAPAPAPVVDTCEPGAYISGSI
GIGIPEKSNFDGYKYEMETGLALNGAIGYDFGDTRLEAAVGYQKHDFKNYDDDLSLLTVMANAYYDIDTGSDITPYLMAG
AGWAHVDSSWDESDDVFAWQVGAGLGFKVADCTTLDLGYRYLRPNKFDLGEGDNTKWAVHNIMLGLRYNF

Sequences:

>Translated_230_residues
MIYVVPIHHNQMETAMKKITRMATLGVFLLAGVSGTALANGTSAPEPEPMRYMPPPPPPAPAPAPVVDTCEPGAYISGSI
GIGIPEKSNFDGYKYEMETGLALNGAIGYDFGDTRLEAAVGYQKHDFKNYDDDLSLLTVMANAYYDIDTGSDITPYLMAG
AGWAHVDSSWDESDDVFAWQVGAGLGFKVADCTTLDLGYRYLRPNKFDLGEGDNTKWAVHNIMLGLRYNF
>Mature_230_residues
MIYVVPIHHNQMETAMKKITRMATLGVFLLAGVSGTALANGTSAPEPEPMRYMPPPPPPAPAPAPVVDTCEPGAYISGSI
GIGIPEKSNFDGYKYEMETGLALNGAIGYDFGDTRLEAAVGYQKHDFKNYDDDLSLLTVMANAYYDIDTGSDITPYLMAG
AGWAHVDSSWDESDDVFAWQVGAGLGFKVADCTTLDLGYRYLRPNKFDLGEGDNTKWAVHNIMLGLRYNF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the opacity porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR003394 [H]

Pfam domain/function: PF02462 Opacity [H]

EC number: NA

Molecular weight: Translated: 25034; Mature: 25034

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYVVPIHHNQMETAMKKITRMATLGVFLLAGVSGTALANGTSAPEPEPMRYMPPPPPPA
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCC
PAPAPVVDTCEPGAYISGSIGIGIPEKSNFDGYKYEMETGLALNGAIGYDFGDTRLEAAV
CCCCCCCCCCCCCCEEECCEEECCCCCCCCCCEEEEEECCEEEECEEECCCCCHHHHHHH
GYQKHDFKNYDDDLSLLTVMANAYYDIDTGSDITPYLMAGAGWAHVDSSWDESDDVFAWQ
CCCCCCCCCCCCHHHHHHHHHHCEEECCCCCCCCHHEEECCCEEECCCCCCCCCCEEEEE
VGAGLGFKVADCTTLDLGYRYLRPNKFDLGEGDNTKWAVHNIMLGLRYNF
ECCCCCEEEECEEEEECCEEEECCCCCCCCCCCCCEEEEEEEEEEEEECC
>Mature Secondary Structure
MIYVVPIHHNQMETAMKKITRMATLGVFLLAGVSGTALANGTSAPEPEPMRYMPPPPPPA
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCC
PAPAPVVDTCEPGAYISGSIGIGIPEKSNFDGYKYEMETGLALNGAIGYDFGDTRLEAAV
CCCCCCCCCCCCCCEEECCEEECCCCCCCCCCEEEEEECCEEEECEEECCCCCHHHHHHH
GYQKHDFKNYDDDLSLLTVMANAYYDIDTGSDITPYLMAGAGWAHVDSSWDESDDVFAWQ
CCCCCCCCCCCCHHHHHHHHHHCEEECCCCCCCCHHEEECCCEEECCCCCCCCCCEEEEE
VGAGLGFKVADCTTLDLGYRYLRPNKFDLGEGDNTKWAVHNIMLGLRYNF
ECCCCCEEEECEEEEECCEEEECCCCCCCCCCCCCEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]