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The map label for this gene is rlpA [C]

Identifier: 193213586

GI number: 193213586

Start: 2147679

End: 2148119

Strand: Direct

Name: rlpA [C]

Synonym: Cpar_1947

Alternate gene names: 193213586

Gene position: 2147679-2148119 (Clockwise)

Preceding gene: 193213579

Following gene: 193213587

Centisome position: 93.82

GC content: 53.06

Gene sequence:

>441_bases
ATGCACTATAAAAACAACGTTTTATCAGGATTTCTCGTCCTTGCACTCTCATTTATCACCCTACTCTCACCAAACAGCGT
TTTCGCTCGCCAGAACACCCCGGCGCTGAAAAGCAAAACCGCCCAACCCGTCGCTAACGGCAACAAATTTCTCGTAGCCA
CAGGAACAGCCTCCTACTATGGAAGCAAATTCCATGGCAGAACGACAGCCAATGGCGAACAGTTTGACATGAGAACTTTC
ACGGCCGCTCACCGCTCACTGCCTTTCGGCACCATTGTCCGGGTCACCAACCTCAACAATGGTAAAATGGTCTTCGTGAC
CATCAACGACCGCGGTCCCTACGTCGGCAAGCGCATCATCGACCTCTCGAAGGCCGCTGCCAAGCAGCTCGACATGGTCG
ACGCTGGCGTCAGCAGGGTCAAGATCGAAGCCTACAACTGA

Upstream 100 bases:

>100_bases
AAAGCTAACCGGCGCACTACCAGAAACATTTATTCAGTACGAAAAAAGGCTCCATGCACAACCATCGAAGGGGTAGCTGC
GCAATAACCGGGATACGATT

Downstream 100 bases:

>100_bases
TCGGCAGCTCTCTTCCCGAACCATCGCCAGACATGAGCCTGTGCTGTCTCGTCGCATGATGAGACAGCGCAAGCCTGCCG
CCTCACCCCGTCCCCGGAAA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MHYKNNVLSGFLVLALSFITLLSPNSVFARQNTPALKSKTAQPVANGNKFLVATGTASYYGSKFHGRTTANGEQFDMRTF
TAAHRSLPFGTIVRVTNLNNGKMVFVTINDRGPYVGKRIIDLSKAAAKQLDMVDAGVSRVKIEAYN

Sequences:

>Translated_146_residues
MHYKNNVLSGFLVLALSFITLLSPNSVFARQNTPALKSKTAQPVANGNKFLVATGTASYYGSKFHGRTTANGEQFDMRTF
TAAHRSLPFGTIVRVTNLNNGKMVFVTINDRGPYVGKRIIDLSKAAAKQLDMVDAGVSRVKIEAYN
>Mature_146_residues
MHYKNNVLSGFLVLALSFITLLSPNSVFARQNTPALKSKTAQPVANGNKFLVATGTASYYGSKFHGRTTANGEQFDMRTF
TAAHRSLPFGTIVRVTNLNNGKMVFVTINDRGPYVGKRIIDLSKAAAKQLDMVDAGVSRVKIEAYN

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=88, Percent_Identity=46.5909090909091, Blast_Score=81, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 15931; Mature: 15931

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYKNNVLSGFLVLALSFITLLSPNSVFARQNTPALKSKTAQPVANGNKFLVATGTASYY
CCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCHHHC
GSKFHGRTTANGEQFDMRTFTAAHRSLPFGTIVRVTNLNNGKMVFVTINDRGPYVGKRII
CCCCCCCCCCCCCEEEHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHH
DLSKAAAKQLDMVDAGVSRVKIEAYN
HHHHHHHHHHHHHHCCCEEEEEEECC
>Mature Secondary Structure
MHYKNNVLSGFLVLALSFITLLSPNSVFARQNTPALKSKTAQPVANGNKFLVATGTASYY
CCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCHHHC
GSKFHGRTTANGEQFDMRTFTAAHRSLPFGTIVRVTNLNNGKMVFVTINDRGPYVGKRII
CCCCCCCCCCCCCEEEHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHH
DLSKAAAKQLDMVDAGVSRVKIEAYN
HHHHHHHHHHHHHHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]