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The map label for this gene is 193213493

Identifier: 193213493

GI number: 193213493

Start: 2037989

End: 2039824

Strand: Direct

Name: 193213493

Synonym: Cpar_1854

Alternate gene names: NA

Gene position: 2037989-2039824 (Clockwise)

Preceding gene: 193213492

Following gene: 193213495

Centisome position: 89.02

GC content: 60.24

Gene sequence:

>1836_bases
ATGACCATCGCTCTCACCATCTTTCCCTGCTTTTCGGACAAAACGCTCCCGCTCGGCCTGGCTTGCCTGAAAAGCGTGCT
GGACGGCGAGGGCATCGAAAGTGAGGTGTTCGATTTCGACCTGTTGCTGAGCATCGAAGACCCGGCGCTCTACTACCAGC
TCCATCGCCTCGGAGCCAGCCCCGGCGCGGCGCTCGACGACCGGATGATAAACTTCATCGGCTACCGCCCCGACCTCACC
CTTGCGGCACTCTTCACCCCGCCCGAAGAGGCGCGAAAGCGGTTCGAAACGGACGGACTTGAACAGCTTTTCGACAAGCT
CGACCACTTCCTCGAACGCGCGGTCACGCGGCTGCTCGCAACGGAGCCGGAGCAAATCTGGCTCTCCACCTACATCAGCA
ACCTCTGGGTTTCGATGCTCGCCGCCCGCAAACTGCGCGAACGCACGGAAGCGACAATCGTGTTCGGAGGCCCGGCGGTG
TTCCCCGAAGAGGTGCAGCGTTTTCTGATTGTGAACGGTCTGGCCGACAGGGTCGTCGTGGGCGAAGGTGAACTGACGGC
GCGGGAGCTGATCCGCGCGAACGGCAGGCCGGTGGCGGGCGCGGCGCAAATGATCGAGGGGGAGTTCCGGTACGAGCCGC
GCCACGAATGGCTGAGGCCAGAGGAGTTCCCGATGCCCGATTTCAAAGGATTCCCATTCGCGGACACGCCCTTCGACGCC
TACCTGCGGCGGCGCTTCGAGGGCCTCCCGGTCTCCTTTTCGCGCGGCTGCGTCAACGGCTGTATCTACTGCTCCGAAAA
GCAGATATGGAAGCGCTTCCGCCACCTCTCGCCCGAAGCCTCCGTCGAACGGCTCGCCGCGTACAAACAGCGCTTCGGCA
TCGGTCTCTTCTACATTTGCGACAGCCTCATCAACTTCAGCGAAGCGTGGCTGTCGGAGTTCTGCGACCTGATTCTGTCG
AGCGATCTGCAACCGCTCTTCACCTTCGCCTTCTGCGACCTGAAGCACCTCAAACCGGAGCTGACCGCAAAGATGGCTGC
GGCGGGATTCACGAGGATCACCTTCGGCCTCGAAAGCGCGTCCGAAAACGTGCTGACGAGAATGCACAAAAAGCTCGATC
TCGACCTCGCCCGCGAAAACATCGTCGCGGCAACCCGCAACGGGCTGTCGATCCACGTATCAACCATCATCAACTTTCCG
GGCGAACAGACCGCCGACGCGCTCGACACAATCCGGTTTTTCAGAGAGATCGACCGTGAGCTTGCTGGCAACAACCTGCC
GATGACGCACCTGCCCCGCCGAAGCCTCAGCAACCGCTTTCGGCTCGAACCCGCCTCGGCGATCTACCTGCACCCGGAGC
ACTACGGCATCCGCATGGAAACGACCGGAGCATCGTGGACGCCGCTTGCTGAAGAGAGCGCCTTTCTGGCCAAACGGTGG
CGTTCGTCCGACGACCAGGAGCAACTGGAGTGGAACGCTTACCTGCTTTCCGGCTTTTCAAAAAACCCGCGACCGTGGCA
CCTGCACGACAGCCAGTACAGAAAACAGGCCGAAGCCATTGCCCCGCTCATCGACAAGGAAAAGCATCGCTTCACACTCT
CGCCGCATGTCGTATTGCGACAATCGACTCCCGAAAACGGGCTCATCCTGCACGATTACCGCGAAGAGTTCCAGCTCGAC
GACTGGCAATCCCAAGTTATCAGGCTGCTGGCAAAAAAAGCTTCTCTCCATGAAATTACGGAAAAGATCACCGCCCTCAC
CGAAGCGAAATCGGCTGGCGCAATCAGAGACTTCGTGCTTTTCCTCTATGTGAGAGGCATCGCCCGAATCACCTGA

Upstream 100 bases:

>100_bases
AAACTGTCGAAACGGCGAGGCGGCTTCAGAAACGACAGATCACCAATCTGCCCGACCAGCGCCGCCTTGCAGAAATCCTC
ACAACCGCCAGGAACGAAAC

Downstream 100 bases:

>100_bases
ACAAGCCGGACCGGTTTATTTGCCCAACGAAGAGGAGGGGTTAAGAGACTGATGGTAGAGAATCAGCGATTTCATCTCAA
CCGATTCAAGCGGCAGGGGT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 610

Protein sequence:

>611_residues
MTIALTIFPCFSDKTLPLGLACLKSVLDGEGIESEVFDFDLLLSIEDPALYYQLHRLGASPGAALDDRMINFIGYRPDLT
LAALFTPPEEARKRFETDGLEQLFDKLDHFLERAVTRLLATEPEQIWLSTYISNLWVSMLAARKLRERTEATIVFGGPAV
FPEEVQRFLIVNGLADRVVVGEGELTARELIRANGRPVAGAAQMIEGEFRYEPRHEWLRPEEFPMPDFKGFPFADTPFDA
YLRRRFEGLPVSFSRGCVNGCIYCSEKQIWKRFRHLSPEASVERLAAYKQRFGIGLFYICDSLINFSEAWLSEFCDLILS
SDLQPLFTFAFCDLKHLKPELTAKMAAAGFTRITFGLESASENVLTRMHKKLDLDLARENIVAATRNGLSIHVSTIINFP
GEQTADALDTIRFFREIDRELAGNNLPMTHLPRRSLSNRFRLEPASAIYLHPEHYGIRMETTGASWTPLAEESAFLAKRW
RSSDDQEQLEWNAYLLSGFSKNPRPWHLHDSQYRKQAEAIAPLIDKEKHRFTLSPHVVLRQSTPENGLILHDYREEFQLD
DWQSQVIRLLAKKASLHEITEKITALTEAKSAGAIRDFVLFLYVRGIARIT

Sequences:

>Translated_611_residues
MTIALTIFPCFSDKTLPLGLACLKSVLDGEGIESEVFDFDLLLSIEDPALYYQLHRLGASPGAALDDRMINFIGYRPDLT
LAALFTPPEEARKRFETDGLEQLFDKLDHFLERAVTRLLATEPEQIWLSTYISNLWVSMLAARKLRERTEATIVFGGPAV
FPEEVQRFLIVNGLADRVVVGEGELTARELIRANGRPVAGAAQMIEGEFRYEPRHEWLRPEEFPMPDFKGFPFADTPFDA
YLRRRFEGLPVSFSRGCVNGCIYCSEKQIWKRFRHLSPEASVERLAAYKQRFGIGLFYICDSLINFSEAWLSEFCDLILS
SDLQPLFTFAFCDLKHLKPELTAKMAAAGFTRITFGLESASENVLTRMHKKLDLDLARENIVAATRNGLSIHVSTIINFP
GEQTADALDTIRFFREIDRELAGNNLPMTHLPRRSLSNRFRLEPASAIYLHPEHYGIRMETTGASWTPLAEESAFLAKRW
RSSDDQEQLEWNAYLLSGFSKNPRPWHLHDSQYRKQAEAIAPLIDKEKHRFTLSPHVVLRQSTPENGLILHDYREEFQLD
DWQSQVIRLLAKKASLHEITEKITALTEAKSAGAIRDFVLFLYVRGIARIT
>Mature_610_residues
TIALTIFPCFSDKTLPLGLACLKSVLDGEGIESEVFDFDLLLSIEDPALYYQLHRLGASPGAALDDRMINFIGYRPDLTL
AALFTPPEEARKRFETDGLEQLFDKLDHFLERAVTRLLATEPEQIWLSTYISNLWVSMLAARKLRERTEATIVFGGPAVF
PEEVQRFLIVNGLADRVVVGEGELTARELIRANGRPVAGAAQMIEGEFRYEPRHEWLRPEEFPMPDFKGFPFADTPFDAY
LRRRFEGLPVSFSRGCVNGCIYCSEKQIWKRFRHLSPEASVERLAAYKQRFGIGLFYICDSLINFSEAWLSEFCDLILSS
DLQPLFTFAFCDLKHLKPELTAKMAAAGFTRITFGLESASENVLTRMHKKLDLDLARENIVAATRNGLSIHVSTIINFPG
EQTADALDTIRFFREIDRELAGNNLPMTHLPRRSLSNRFRLEPASAIYLHPEHYGIRMETTGASWTPLAEESAFLAKRWR
SSDDQEQLEWNAYLLSGFSKNPRPWHLHDSQYRKQAEAIAPLIDKEKHRFTLSPHVVLRQSTPENGLILHDYREEFQLDD
WQSQVIRLLAKKASLHEITEKITALTEAKSAGAIRDFVLFLYVRGIARIT

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 69743; Mature: 69611

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIALTIFPCFSDKTLPLGLACLKSVLDGEGIESEVFDFDLLLSIEDPALYYQLHRLGAS
CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHCCEEEEEEECCHHHHHHHHHHCCC
PGAALDDRMINFIGYRPDLTLAALFTPPEEARKRFETDGLEQLFDKLDHFLERAVTRLLA
CCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
TEPEQIWLSTYISNLWVSMLAARKLRERTEATIVFGGPAVFPEEVQRFLIVNGLADRVVV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEE
GEGELTARELIRANGRPVAGAAQMIEGEFRYEPRHEWLRPEEFPMPDFKGFPFADTPFDA
CCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHH
YLRRRFEGLPVSFSRGCVNGCIYCSEKQIWKRFRHLSPEASVERLAAYKQRFGIGLFYIC
HHHHHHCCCCCCHHCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
DSLINFSEAWLSEFCDLILSSDLQPLFTFAFCDLKHLKPELTAKMAAAGFTRITFGLESA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHEEEEHHHH
SENVLTRMHKKLDLDLARENIVAATRNGLSIHVSTIINFPGEQTADALDTIRFFREIDRE
HHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
LAGNNLPMTHLPRRSLSNRFRLEPASAIYLHPEHYGIRMETTGASWTPLAEESAFLAKRW
HCCCCCCCCCCCHHHHCCCEECCCCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHH
RSSDDQEQLEWNAYLLSGFSKNPRPWHLHDSQYRKQAEAIAPLIDKEKHRFTLSPHVVLR
CCCCCHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCEEEE
QSTPENGLILHDYREEFQLDDWQSQVIRLLAKKASLHEITEKITALTEAKSAGAIRDFVL
CCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FLYVRGIARIT
HHHHHHHHHCC
>Mature Secondary Structure 
TIALTIFPCFSDKTLPLGLACLKSVLDGEGIESEVFDFDLLLSIEDPALYYQLHRLGAS
EEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHCCEEEEEEECCHHHHHHHHHHCCC
PGAALDDRMINFIGYRPDLTLAALFTPPEEARKRFETDGLEQLFDKLDHFLERAVTRLLA
CCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
TEPEQIWLSTYISNLWVSMLAARKLRERTEATIVFGGPAVFPEEVQRFLIVNGLADRVVV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEE
GEGELTARELIRANGRPVAGAAQMIEGEFRYEPRHEWLRPEEFPMPDFKGFPFADTPFDA
CCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHH
YLRRRFEGLPVSFSRGCVNGCIYCSEKQIWKRFRHLSPEASVERLAAYKQRFGIGLFYIC
HHHHHHCCCCCCHHCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
DSLINFSEAWLSEFCDLILSSDLQPLFTFAFCDLKHLKPELTAKMAAAGFTRITFGLESA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHEEEEHHHH
SENVLTRMHKKLDLDLARENIVAATRNGLSIHVSTIINFPGEQTADALDTIRFFREIDRE
HHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
LAGNNLPMTHLPRRSLSNRFRLEPASAIYLHPEHYGIRMETTGASWTPLAEESAFLAKRW
HCCCCCCCCCCCHHHHCCCEECCCCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHH
RSSDDQEQLEWNAYLLSGFSKNPRPWHLHDSQYRKQAEAIAPLIDKEKHRFTLSPHVVLR
CCCCCHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCEEEE
QSTPENGLILHDYREEFQLDDWQSQVIRLLAKKASLHEITEKITALTEAKSAGAIRDFVL
CCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FLYVRGIARIT
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]