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The map label for this gene is cydB [H]

Identifier: 193213311

GI number: 193213311

Start: 1820749

End: 1821771

Strand: Direct

Name: cydB [H]

Synonym: Cpar_1669

Alternate gene names: 193213311

Gene position: 1820749-1821771 (Clockwise)

Preceding gene: 193213310

Following gene: 193213312

Centisome position: 79.53

GC content: 59.04

Gene sequence:

>1023_bases
ATGGATTTGCAGACATTGCAGATAATCTGGTTCGTCCTGGTCGCCGTCCTGTTTACCGGATTCTTCATTCTCGAAGGATT
CGACTTCGGCGTCGGCATCCTGCTGCCTTTCATGGGCAAAGACGACCTCGATCGCCGCGCGGTGATCAACACCATCGGCC
CATTCTGGGACGGTAACGAAGTGTGGCTTATCACGGCCGGCGGCGCGATTTTCGCCGCGTTCCCGCACTGGTACGCCACG
CTGTTCAGCGGCTTCTACCTTGCGCTTCTGCTCATGGTGGTGGCACTCATTTTTCGTGGCGTGGCCTTCGAGTACCGGAG
CAAAAGCGACAGCCCGGCGTGGCGCAGCTTCTGGGACTGGAGCATCTTCCTCGGCAGCGCCATTCCTGCCCTGCTCTGGG
GTGTAGCGATGGCCAACTTCATCCGTGGCGTGCCGATCGATGAAACGATGAACTACACTGGCGGCTTCTTCAACCTGCTC
AACCCGTACGCGCTCGCTTGCGGCCTGGCCTCGCTGATGATCTTCACGCTGCACGGTGCGGTGTTCCTGACGCTCAAAAC
TACCGATGACCTCCACGAACGCGCGATGGGGCTGGCCAAAAAGCTCTGGGTTCCGGCTACTGTGCTCTCGCTGGTCTTTG
CGGTTTACACCTTCGTGGAAACCGACCTGTTCGCACGCCTCGGCGTCAACCCTGGCGCAATCCCGATCTTCAGCGTGCTC
GCACTGCTCTCGGTGATCGTGCTGCTCAACAAGGGCGCATCCGGCTGGGCGTTCGTCATGACCGCCGTTTCGATTGCGTT
CTCGACCATCACCATCTTCATGGGACTCTTCCCGAGAGTGCTGGTTTCGAGCACCAATCCCGACTGGAGCCTGACGATTT
ACAACGCTTCGTCGTCGCAGTACACCCTCGGCATCATGACCACGGTCGCGGCGATTTTCGTGCCGATCGTGCTGCTCTAT
CAGGGCTGGAGCTACTGGGTCTTCCGCCAGCGCGTAACGAAAGACTCGAAGATGGAGTATTGA

Upstream 100 bases:

>100_bases
GCTCATCTACAGTGCTCTGACGCTGGTGGATGTGTTTCTCTTGAAAAAATATGCAACGGCTGGCCTTCACGGCGCTGAAT
AAACCGAAAAGGAGAAAACA

Downstream 100 bases:

>100_bases
GCTGACAACACATTTTCTTTCTGTAGGGGCGACCGGTTGGTCGCCCTTCTTTGTTATCTTTCTTTCACATTTGATGATTC
AATCAGAAATCGCCCTGTTG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MDLQTLQIIWFVLVAVLFTGFFILEGFDFGVGILLPFMGKDDLDRRAVINTIGPFWDGNEVWLITAGGAIFAAFPHWYAT
LFSGFYLALLLMVVALIFRGVAFEYRSKSDSPAWRSFWDWSIFLGSAIPALLWGVAMANFIRGVPIDETMNYTGGFFNLL
NPYALACGLASLMIFTLHGAVFLTLKTTDDLHERAMGLAKKLWVPATVLSLVFAVYTFVETDLFARLGVNPGAIPIFSVL
ALLSVIVLLNKGASGWAFVMTAVSIAFSTITIFMGLFPRVLVSSTNPDWSLTIYNASSSQYTLGIMTTVAAIFVPIVLLY
QGWSYWVFRQRVTKDSKMEY

Sequences:

>Translated_340_residues
MDLQTLQIIWFVLVAVLFTGFFILEGFDFGVGILLPFMGKDDLDRRAVINTIGPFWDGNEVWLITAGGAIFAAFPHWYAT
LFSGFYLALLLMVVALIFRGVAFEYRSKSDSPAWRSFWDWSIFLGSAIPALLWGVAMANFIRGVPIDETMNYTGGFFNLL
NPYALACGLASLMIFTLHGAVFLTLKTTDDLHERAMGLAKKLWVPATVLSLVFAVYTFVETDLFARLGVNPGAIPIFSVL
ALLSVIVLLNKGASGWAFVMTAVSIAFSTITIFMGLFPRVLVSSTNPDWSLTIYNASSSQYTLGIMTTVAAIFVPIVLLY
QGWSYWVFRQRVTKDSKMEY
>Mature_340_residues
MDLQTLQIIWFVLVAVLFTGFFILEGFDFGVGILLPFMGKDDLDRRAVINTIGPFWDGNEVWLITAGGAIFAAFPHWYAT
LFSGFYLALLLMVVALIFRGVAFEYRSKSDSPAWRSFWDWSIFLGSAIPALLWGVAMANFIRGVPIDETMNYTGGFFNLL
NPYALACGLASLMIFTLHGAVFLTLKTTDDLHERAMGLAKKLWVPATVLSLVFAVYTFVETDLFARLGVNPGAIPIFSVL
ALLSVIVLLNKGASGWAFVMTAVSIAFSTITIFMGLFPRVLVSSTNPDWSLTIYNASSSQYTLGIMTTVAAIFVPIVLLY
QGWSYWVFRQRVTKDSKMEY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=372, Percent_Identity=40.8602150537634, Blast_Score=268, Evalue=3e-73,
Organism=Escherichia coli, GI1787213, Length=367, Percent_Identity=37.874659400545, Blast_Score=237, Evalue=7e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37796; Mature: 37796

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLQTLQIIWFVLVAVLFTGFFILEGFDFGVGILLPFMGKDDLDRRAVINTIGPFWDGNE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCE
VWLITAGGAIFAAFPHWYATLFSGFYLALLLMVVALIFRGVAFEYRSKSDSPAWRSFWDW
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
SIFLGSAIPALLWGVAMANFIRGVPIDETMNYTGGFFNLLNPYALACGLASLMIFTLHGA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE
VFLTLKTTDDLHERAMGLAKKLWVPATVLSLVFAVYTFVETDLFARLGVNPGAIPIFSVL
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ALLSVIVLLNKGASGWAFVMTAVSIAFSTITIFMGLFPRVLVSSTNPDWSLTIYNASSSQ
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
YTLGIMTTVAAIFVPIVLLYQGWSYWVFRQRVTKDSKMEY
EEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDLQTLQIIWFVLVAVLFTGFFILEGFDFGVGILLPFMGKDDLDRRAVINTIGPFWDGNE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCE
VWLITAGGAIFAAFPHWYATLFSGFYLALLLMVVALIFRGVAFEYRSKSDSPAWRSFWDW
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
SIFLGSAIPALLWGVAMANFIRGVPIDETMNYTGGFFNLLNPYALACGLASLMIFTLHGA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE
VFLTLKTTDDLHERAMGLAKKLWVPATVLSLVFAVYTFVETDLFARLGVNPGAIPIFSVL
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ALLSVIVLLNKGASGWAFVMTAVSIAFSTITIFMGLFPRVLVSSTNPDWSLTIYNASSSQ
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
YTLGIMTTVAAIFVPIVLLYQGWSYWVFRQRVTKDSKMEY
EEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]