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The map label for this gene is cydA [H]

Identifier: 193213310

GI number: 193213310

Start: 1819375

End: 1820730

Strand: Direct

Name: cydA [H]

Synonym: Cpar_1668

Alternate gene names: 193213310

Gene position: 1819375-1820730 (Clockwise)

Preceding gene: 193213309

Following gene: 193213311

Centisome position: 79.47

GC content: 58.55

Gene sequence:

>1356_bases
ATGGACACACTCTTTCTTGCGCGGCTTCAATTCGCCCTGACGTCGGTGTTCCACTTCTTCTTCGTACCGCTTACCCTCGG
ACTCTCCATCTTCACGGCGATCATGGAAACCGCATGGGTCAGGACGGGCAAGGAGAAGTACCGTCAGCTGACCAAATTCT
GGGGGCATCTGTTCCTCATCAACTTTGCCATCGGCGTCGTTACCGGTATTGTCATGGAGTTCCAGTTCGGCATGAACTGG
TCACAGTACTCCCGTTTCGTCGGCGACATCTTTGGCGTGCCGCTCGCCATCGAGGCGCTGCTCGCTTTCTTCCTCGAATC
GACCTTCCTCGGCATCTGGGTCTTCGGCTGGGATCGCATCCCTAAAGGGCTGCACGCCGCCGCCATCTGGCTGGTAGCCA
TCGGCTCGAACCTCTCGGCGCTCTGGATTCTGGTCGCCAATTCTTTCATGCAGTCTCCGGTCGGCTTCCAGATGGCCGCT
GACGGCTCACGCGCTGAAATGACCAGCTTCTCGGAGCTGCTCTTCAACCCCTACGTCTGGTTGCAGTTCCCGCACGTGAT
CACCGCCGGAATCGCCACGGGTGGCTTTCTCGTAATCGCGGTCAGCGCCTGGCACCTGATGAAAAAGACCAAGGACGAGG
AGCAGTTCAGGACCTCGCTCAAATTCGGTGCAATTTACGCGTTTATCGGCTCGCTGCTGGTCAGCCTCGCCGGTCACACG
CAGATGCAGGAGATGGTGCACAACCAGCCGATGAAAGTGGCCGCCGCCGAAGCGCTCTGGCACTCTGAAGATCCAGCCAG
CTTCTCGCTTTTCACCATTGGTGACGAAGAAAAGATGGAGGACGTTTTCTCGATCCGCGTACCTGCCATGTTGTCGTTCC
TTGCCTACAACAAATTCTCGGGTGAGGTCAAGGGCCTCAGCGAACTTCAGGAAGAGGCCGTCGCCAAATACGGCCCCGGC
GACTACATTCCGTCGGTCATCACCGCCTACTGGAGCTTCCGTTTCATGGTTGGCGCCGGCACGCTGATGCTGCTGGCCGC
TGCGGTGGCGCTTTTCAAGGTGATCCGCGAGGACTATACCTTCGGCAAGCTCACCGGTGCGCTGCTGCTCTCGGCGTTCA
TCCTGCCCTTCATCGCCAACTCGGCGGGCTGGATTCTGACCGAGATGGGCCGCCAGCCGTGGATCGTGGTCGGGCTGCTC
AAAACCGAGCAGGCAGTCACGCCCGCATCGGTGGTTAGCGGCGCTGAACTGCTGACCTCGGTCGTAGTGTTCACGCTCAT
CTACAGTGCTCTGACGCTGGTGGATGTGTTTCTCTTGAAAAAATATGCAACGGCTGGCCTTCACGGCGCTGAATAA

Upstream 100 bases:

>100_bases
TAAAAAAATAGCCTCATCAGTGAATTTTTCAGCCTCACGCGAGGTTTTGGAAATCGTTATCACTCATAACAACCACACAT
CAACCATTCATTAAGTAAAA

Downstream 100 bases:

>100_bases
ACCGAAAAGGAGAAAACAATGGATTTGCAGACATTGCAGATAATCTGGTTCGTCCTGGTCGCCGTCCTGTTTACCGGATT
CTTCATTCTCGAAGGATTCG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MDTLFLARLQFALTSVFHFFFVPLTLGLSIFTAIMETAWVRTGKEKYRQLTKFWGHLFLINFAIGVVTGIVMEFQFGMNW
SQYSRFVGDIFGVPLAIEALLAFFLESTFLGIWVFGWDRIPKGLHAAAIWLVAIGSNLSALWILVANSFMQSPVGFQMAA
DGSRAEMTSFSELLFNPYVWLQFPHVITAGIATGGFLVIAVSAWHLMKKTKDEEQFRTSLKFGAIYAFIGSLLVSLAGHT
QMQEMVHNQPMKVAAAEALWHSEDPASFSLFTIGDEEKMEDVFSIRVPAMLSFLAYNKFSGEVKGLSELQEEAVAKYGPG
DYIPSVITAYWSFRFMVGAGTLMLLAAAVALFKVIREDYTFGKLTGALLLSAFILPFIANSAGWILTEMGRQPWIVVGLL
KTEQAVTPASVVSGAELLTSVVVFTLIYSALTLVDVFLLKKYATAGLHGAE

Sequences:

>Translated_451_residues
MDTLFLARLQFALTSVFHFFFVPLTLGLSIFTAIMETAWVRTGKEKYRQLTKFWGHLFLINFAIGVVTGIVMEFQFGMNW
SQYSRFVGDIFGVPLAIEALLAFFLESTFLGIWVFGWDRIPKGLHAAAIWLVAIGSNLSALWILVANSFMQSPVGFQMAA
DGSRAEMTSFSELLFNPYVWLQFPHVITAGIATGGFLVIAVSAWHLMKKTKDEEQFRTSLKFGAIYAFIGSLLVSLAGHT
QMQEMVHNQPMKVAAAEALWHSEDPASFSLFTIGDEEKMEDVFSIRVPAMLSFLAYNKFSGEVKGLSELQEEAVAKYGPG
DYIPSVITAYWSFRFMVGAGTLMLLAAAVALFKVIREDYTFGKLTGALLLSAFILPFIANSAGWILTEMGRQPWIVVGLL
KTEQAVTPASVVSGAELLTSVVVFTLIYSALTLVDVFLLKKYATAGLHGAE
>Mature_451_residues
MDTLFLARLQFALTSVFHFFFVPLTLGLSIFTAIMETAWVRTGKEKYRQLTKFWGHLFLINFAIGVVTGIVMEFQFGMNW
SQYSRFVGDIFGVPLAIEALLAFFLESTFLGIWVFGWDRIPKGLHAAAIWLVAIGSNLSALWILVANSFMQSPVGFQMAA
DGSRAEMTSFSELLFNPYVWLQFPHVITAGIATGGFLVIAVSAWHLMKKTKDEEQFRTSLKFGAIYAFIGSLLVSLAGHT
QMQEMVHNQPMKVAAAEALWHSEDPASFSLFTIGDEEKMEDVFSIRVPAMLSFLAYNKFSGEVKGLSELQEEAVAKYGPG
DYIPSVITAYWSFRFMVGAGTLMLLAAAVALFKVIREDYTFGKLTGALLLSAFILPFIANSAGWILTEMGRQPWIVVGLL
KTEQAVTPASVVSGAELLTSVVVFTLIYSALTLVDVFLLKKYATAGLHGAE

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=503, Percent_Identity=40.3578528827038, Blast_Score=343, Evalue=2e-95,
Organism=Escherichia coli, GI1787212, Length=505, Percent_Identity=40.3960396039604, Blast_Score=342, Evalue=3e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49838; Mature: 49838

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLFLARLQFALTSVFHFFFVPLTLGLSIFTAIMETAWVRTGKEKYRQLTKFWGHLFLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
NFAIGVVTGIVMEFQFGMNWSQYSRFVGDIFGVPLAIEALLAFFLESTFLGIWVFGWDRI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEEHHHC
PKGLHAAAIWLVAIGSNLSALWILVANSFMQSPVGFQMAADGSRAEMTSFSELLFNPYVW
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCHHE
LQFPHVITAGIATGGFLVIAVSAWHLMKKTKDEEQFRTSLKFGAIYAFIGSLLVSLAGHT
EECHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
QMQEMVHNQPMKVAAAEALWHSEDPASFSLFTIGDEEKMEDVFSIRVPAMLSFLAYNKFS
HHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC
GEVKGLSELQEEAVAKYGPGDYIPSVITAYWSFRFMVGAGTLMLLAAAVALFKVIREDYT
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FGKLTGALLLSAFILPFIANSAGWILTEMGRQPWIVVGLLKTEQAVTPASVVSGAELLTS
HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
VVVFTLIYSALTLVDVFLLKKYATAGLHGAE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDTLFLARLQFALTSVFHFFFVPLTLGLSIFTAIMETAWVRTGKEKYRQLTKFWGHLFLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
NFAIGVVTGIVMEFQFGMNWSQYSRFVGDIFGVPLAIEALLAFFLESTFLGIWVFGWDRI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEEHHHC
PKGLHAAAIWLVAIGSNLSALWILVANSFMQSPVGFQMAADGSRAEMTSFSELLFNPYVW
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCHHE
LQFPHVITAGIATGGFLVIAVSAWHLMKKTKDEEQFRTSLKFGAIYAFIGSLLVSLAGHT
EECHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
QMQEMVHNQPMKVAAAEALWHSEDPASFSLFTIGDEEKMEDVFSIRVPAMLSFLAYNKFS
HHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC
GEVKGLSELQEEAVAKYGPGDYIPSVITAYWSFRFMVGAGTLMLLAAAVALFKVIREDYT
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FGKLTGALLLSAFILPFIANSAGWILTEMGRQPWIVVGLLKTEQAVTPASVVSGAELLTS
HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
VVVFTLIYSALTLVDVFLLKKYATAGLHGAE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]