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The map label for this gene is yhfE [H]

Identifier: 193213073

GI number: 193213073

Start: 1560260

End: 1561396

Strand: Direct

Name: yhfE [H]

Synonym: Cpar_1426

Alternate gene names: 193213073

Gene position: 1560260-1561396 (Clockwise)

Preceding gene: 193213072

Following gene: 193213074

Centisome position: 68.16

GC content: 61.39

Gene sequence:

>1137_bases
ATGATCAACATCGATACCGATTACCTCCGCTCCATTCTGTTCAAGATGCTCCAGATTCCCAGCCCGACGGGCTACACCGA
CGAGATCGTCCACTTCGTCGGGCGCGAGCTGGTGAAAATGGGCGTGCCCTTCGAGCTGACCCGTCGCGGCGCGATTCGGG
CAACGCTGAAAGGCGAACAGCCGAACCTCGACCGTGCCATCGTCACCCATCTCGACACCACGGGCGCGATGGTGCGCGAG
CTGAAAAGCAACGGACGGCTCGGCATCGTCATGATCGGCCACTGGTCGGCACGGTTCGCCGAGGGCGCGCGCGTCACCAT
CTACACCGACGACAACATGTACCGCGGCACCATCCAGCCACTCAAAGCCTCGGGGCACGTCTATAACGAGGAGATCGACA
CCCAGCCGGTATCGTGGGACAACCTCGAAGTGCGGGTGGATGAAAAGGTATATGACAAGGCGGGGCTGGAAAAACTCGGC
TTCAACATCGGCGACTTCGTGGCGGTCGATACCAATCCGGAAATCACGAAAAGCGGCTTCATCAAGGCGCGGCATCTCGA
CAACAAAGCCGGCGTCGCCTGCCAGCTCACGGCCATCAAGGCGATTGTAGAGGCAGGCATCACGCTGCCGGTCAACTGCC
ATCCGCTCTTCACCATCACCGAAGAGGAGGGCACCGGCGCGTCGTCGATCCTCACCGGCAACATCGCCGCGATGGTCGCC
ATCGACAACTCCACGGTCGCGCCCGGCCAGAACTCGCGCGAAGACACGGTCATCATCGCCATGCGCGACCAGGGCGCGAT
CTACGACTACCACCTCACCCACCGGCTCATCCAGATCTGCGAAGACAACGATATCCCCTACGTCCGCGACCTCTTCCGCC
ACTACCGTTCCGACGCCGCCTCCGCACTCTCGGCTGGCAACGACATCCGCACCGCGCTCATCTGCTTCGGCCTTGAAGCC
TCGCACGGCTATGAGCGCACGCACATCGACTCGCTCGTTTCGCTCACCAACCTCATCTGCGCCTATCTGCAGACCACGCC
GCGCATCAAGCACGACAAAAACAAACTCGGCCCGCTCGAAAGCTTCCCGATGCTTCAGGTCCGCAAACGCCGAGCGTTGC
TGAAAAAGAAGGCGTGA

Upstream 100 bases:

>100_bases
AAGCCAACGAACGGCCGGGGCTGGCCAACCACGAGCCGCAACCGACCGCCGAGCGCTTCATCGATTTTCTGTTTCCGCAA
AGCATTGCAAGGGCGATTTC

Downstream 100 bases:

>100_bases
GGCCGAGCATTATCTGAAAAAGACCGTCGAAAAAACCGTGACGAAGCAGCCAAACATAATAGAATTTACGCTCCCGGAAT
GGCTGGCAGAATATGCCGGA

Product: hydrolase, peptidase M42 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MINIDTDYLRSILFKMLQIPSPTGYTDEIVHFVGRELVKMGVPFELTRRGAIRATLKGEQPNLDRAIVTHLDTTGAMVRE
LKSNGRLGIVMIGHWSARFAEGARVTIYTDDNMYRGTIQPLKASGHVYNEEIDTQPVSWDNLEVRVDEKVYDKAGLEKLG
FNIGDFVAVDTNPEITKSGFIKARHLDNKAGVACQLTAIKAIVEAGITLPVNCHPLFTITEEEGTGASSILTGNIAAMVA
IDNSTVAPGQNSREDTVIIAMRDQGAIYDYHLTHRLIQICEDNDIPYVRDLFRHYRSDAASALSAGNDIRTALICFGLEA
SHGYERTHIDSLVSLTNLICAYLQTTPRIKHDKNKLGPLESFPMLQVRKRRALLKKKA

Sequences:

>Translated_378_residues
MINIDTDYLRSILFKMLQIPSPTGYTDEIVHFVGRELVKMGVPFELTRRGAIRATLKGEQPNLDRAIVTHLDTTGAMVRE
LKSNGRLGIVMIGHWSARFAEGARVTIYTDDNMYRGTIQPLKASGHVYNEEIDTQPVSWDNLEVRVDEKVYDKAGLEKLG
FNIGDFVAVDTNPEITKSGFIKARHLDNKAGVACQLTAIKAIVEAGITLPVNCHPLFTITEEEGTGASSILTGNIAAMVA
IDNSTVAPGQNSREDTVIIAMRDQGAIYDYHLTHRLIQICEDNDIPYVRDLFRHYRSDAASALSAGNDIRTALICFGLEA
SHGYERTHIDSLVSLTNLICAYLQTTPRIKHDKNKLGPLESFPMLQVRKRRALLKKKA
>Mature_378_residues
MINIDTDYLRSILFKMLQIPSPTGYTDEIVHFVGRELVKMGVPFELTRRGAIRATLKGEQPNLDRAIVTHLDTTGAMVRE
LKSNGRLGIVMIGHWSARFAEGARVTIYTDDNMYRGTIQPLKASGHVYNEEIDTQPVSWDNLEVRVDEKVYDKAGLEKLG
FNIGDFVAVDTNPEITKSGFIKARHLDNKAGVACQLTAIKAIVEAGITLPVNCHPLFTITEEEGTGASSILTGNIAAMVA
IDNSTVAPGQNSREDTVIIAMRDQGAIYDYHLTHRLIQICEDNDIPYVRDLFRHYRSDAASALSAGNDIRTALICFGLEA
SHGYERTHIDSLVSLTNLICAYLQTTPRIKHDKNKLGPLESFPMLQVRKRRALLKKKA

Specific function: Unknown

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 41994; Mature: 41994

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINIDTDYLRSILFKMLQIPSPTGYTDEIVHFVGRELVKMGVPFELTRRGAIRATLKGEQ
CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCEEEEECCCC
PNLDRAIVTHLDTTGAMVRELKSNGRLGIVMIGHWSARFAEGARVTIYTDDNMYRGTIQP
CCCCHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCHHHCCCCEEEEEECCCEEECCCCE
LKASGHVYNEEIDTQPVSWDNLEVRVDEKVYDKAGLEKLGFNIGDFVAVDTNPEITKSGF
ECCCCCEECCCCCCCCCCCCCEEEEECHHHHHHHCHHHHCCCCCCEEEECCCCCCCCCCC
IKARHLDNKAGVACQLTAIKAIVEAGITLPVNCHPLFTITEEEGTGASSILTGNIAAMVA
EEEEECCCCCCCEEEHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCEEECCEEEEEE
IDNSTVAPGQNSREDTVIIAMRDQGAIYDYHLTHRLIQICEDNDIPYVRDLFRHYRSDAA
ECCCEECCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SALSAGNDIRTALICFGLEASHGYERTHIDSLVSLTNLICAYLQTTPRIKHDKNKLGPLE
HHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SFPMLQVRKRRALLKKKA
CCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MINIDTDYLRSILFKMLQIPSPTGYTDEIVHFVGRELVKMGVPFELTRRGAIRATLKGEQ
CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCEEEEECCCC
PNLDRAIVTHLDTTGAMVRELKSNGRLGIVMIGHWSARFAEGARVTIYTDDNMYRGTIQP
CCCCHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCHHHCCCCEEEEEECCCEEECCCCE
LKASGHVYNEEIDTQPVSWDNLEVRVDEKVYDKAGLEKLGFNIGDFVAVDTNPEITKSGF
ECCCCCEECCCCCCCCCCCCCEEEEECHHHHHHHCHHHHCCCCCCEEEECCCCCCCCCCC
IKARHLDNKAGVACQLTAIKAIVEAGITLPVNCHPLFTITEEEGTGASSILTGNIAAMVA
EEEEECCCCCCCEEEHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCEEECCEEEEEE
IDNSTVAPGQNSREDTVIIAMRDQGAIYDYHLTHRLIQICEDNDIPYVRDLFRHYRSDAA
ECCCEECCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SALSAGNDIRTALICFGLEASHGYERTHIDSLVSLTNLICAYLQTTPRIKHDKNKLGPLE
HHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SFPMLQVRKRRALLKKKA
CCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]