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The map label for this gene is xylS3 [H]

Identifier: 192289000

GI number: 192289000

Start: 619039

End: 620016

Strand: Reverse

Name: xylS3 [H]

Synonym: Rpal_0570

Alternate gene names: 192289000

Gene position: 620016-619039 (Counterclockwise)

Preceding gene: 192289001

Following gene: 192288996

Centisome position: 10.79

GC content: 64.01

Gene sequence:

>978_bases
ATGACCGTCGAGCTTCTCAACGAACCACTCTCCAGGTACCCCGCGTTCGACACCGCCGATCCGGAAGAACTGCGACAGGC
CTTGAGCTCCGTTTACGGCGCCAAGCTGGTGGAAGGTCCCATCGCCGCTGATTTCCATGCGCGCAGCAATTTCGTCCAGC
TCGATGACATCGCGCTCGCCTTCGGTGTCGGCACGGGATCAATCGCGGTCGAATTCCCCGAGGGGGAATGTGCGCGGCTG
CAGATCGCGCTCTCCGGGCAGTTCACCACCCGCAGCGGCGGCACCAGCACGGCGATCAACGCACGGCAGGCCGGCATCAT
CTCGCCGGGCCGCAATGCCCGCACCGAGTATGGGCAGAACTACAGCTTCACCCTGCTGCGCATAAGCACCTCGGCGCTGG
AGCGGAAGCTGACCACTCTGCTCGGCTGCAAGCCGAAGGCTTCGCTCGAATTCGAGCCGGCGGCCAACAACGAAGCTCCG
CAGGTGGTCAACTTGCGCCGGATGCTGTGCTTCCTGGCCAATCAGCTGAATTGCAGCCCGCTGCCGCCGGTGGTTCTGGC
CGAGCTGCAGGAAGCGATCACCCTGCTGTTCCTCAGCGCCTTCCGGCACAATTACAGCCGGCAGCTCGAACGGGAGTCGC
ACGGGATCGCGCCGAAGCACGTCCGCCAGGTCGAGGAATATATCGAAGCCAACTGGATGCGGCCGATCACCATCGAGAAG
CTGACGGCTCTGACCGGGATCAGTTCACGCGGCATCTTCAAGGCGTTCCAGCGCAGCCGTGGCTACTCGCCGATGGCCTT
CGCCAAGCGGGTGCGGCTGCAGCACGCCCATAACCTGCTGTCGGACGGCGCGACGCCCACCACGGTCACGGCTGCAGCGC
TGTCCTGCGGCTTTTCCAATCTCGGGCATTTCGCCCGCGACTATCGCGACATGTTCGGTGAAAAACCCTCGGAAACGCTG
CAACGCGCGCGACCCTAA

Upstream 100 bases:

>100_bases
TTCGGCAAATACCTGGGAATCTTACGAGGACATCCGGTCCCCCCGTTCTGTTACCAGGATTGGCTGGAATGTTGCGTGCG
GACTGGAGACGTAATCGGAG

Downstream 100 bases:

>100_bases
GCAATAAAGATCGGGCCGCGTCCCTCGACGCGGCCCGATCCTTGGATTGATCAGCTAAGCGAGCTCAGCGGTCCGATTAC
TCGATGATCTCGACCACCTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MTVELLNEPLSRYPAFDTADPEELRQALSSVYGAKLVEGPIAADFHARSNFVQLDDIALAFGVGTGSIAVEFPEGECARL
QIALSGQFTTRSGGTSTAINARQAGIISPGRNARTEYGQNYSFTLLRISTSALERKLTTLLGCKPKASLEFEPAANNEAP
QVVNLRRMLCFLANQLNCSPLPPVVLAELQEAITLLFLSAFRHNYSRQLERESHGIAPKHVRQVEEYIEANWMRPITIEK
LTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMFGEKPSETL
QRARP

Sequences:

>Translated_325_residues
MTVELLNEPLSRYPAFDTADPEELRQALSSVYGAKLVEGPIAADFHARSNFVQLDDIALAFGVGTGSIAVEFPEGECARL
QIALSGQFTTRSGGTSTAINARQAGIISPGRNARTEYGQNYSFTLLRISTSALERKLTTLLGCKPKASLEFEPAANNEAP
QVVNLRRMLCFLANQLNCSPLPPVVLAELQEAITLLFLSAFRHNYSRQLERESHGIAPKHVRQVEEYIEANWMRPITIEK
LTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMFGEKPSETL
QRARP
>Mature_324_residues
TVELLNEPLSRYPAFDTADPEELRQALSSVYGAKLVEGPIAADFHARSNFVQLDDIALAFGVGTGSIAVEFPEGECARLQ
IALSGQFTTRSGGTSTAINARQAGIISPGRNARTEYGQNYSFTLLRISTSALERKLTTLLGCKPKASLEFEPAANNEAPQ
VVNLRRMLCFLANQLNCSPLPPVVLAELQEAITLLFLSAFRHNYSRQLERESHGIAPKHVRQVEEYIEANWMRPITIEKL
TALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMFGEKPSETLQ
RARP

Specific function: Regulatory protein of the TOL plasmid xyl operons. XylS activates the xylXYZLTEGFJQKIH operon required for the degradation of toluene, m-xylene and p-xylene [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788778, Length=117, Percent_Identity=37.6068376068376, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35746; Mature: 35615

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVELLNEPLSRYPAFDTADPEELRQALSSVYGAKLVEGPIAADFHARSNFVQLDDIALA
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCEEEHHEEEE
FGVGTGSIAVEFPEGECARLQIALSGQFTTRSGGTSTAINARQAGIISPGRNARTEYGQN
EECCCCCEEEECCCCCCEEEEEEEECCEEECCCCCCCCCCHHHCCCCCCCCCCHHHCCCC
YSFTLLRISTSALERKLTTLLGCKPKASLEFEPAANNEAPQVVNLRRMLCFLANQLNCSP
CEEEEEEECHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
LPPVVLAELQEAITLLFLSAFRHNYSRQLERESHGIAPKHVRQVEEYIEANWMRPITIEK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHH
LTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSN
HHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHH
LGHFARDYRDMFGEKPSETLQRARP
HHHHHHHHHHHHCCCHHHHHHHCCC
>Mature Secondary Structure 
TVELLNEPLSRYPAFDTADPEELRQALSSVYGAKLVEGPIAADFHARSNFVQLDDIALA
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCEEEHHEEEE
FGVGTGSIAVEFPEGECARLQIALSGQFTTRSGGTSTAINARQAGIISPGRNARTEYGQN
EECCCCCEEEECCCCCCEEEEEEEECCEEECCCCCCCCCCHHHCCCCCCCCCCHHHCCCC
YSFTLLRISTSALERKLTTLLGCKPKASLEFEPAANNEAPQVVNLRRMLCFLANQLNCSP
CEEEEEEECHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
LPPVVLAELQEAITLLFLSAFRHNYSRQLERESHGIAPKHVRQVEEYIEANWMRPITIEK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHH
LTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSN
HHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHH
LGHFARDYRDMFGEKPSETLQRARP
HHHHHHHHHHHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473862 [H]