Click here to switch to the map view.

The map label for this gene is 192288988

Identifier: 192288988

GI number: 192288988

Start: 607089

End: 607646

Strand: Reverse

Name: 192288988

Synonym: Rpal_0558

Alternate gene names: NA

Gene position: 607646-607089 (Counterclockwise)

Preceding gene: 192288990

Following gene: 192288987

Centisome position: 10.58

GC content: 61.29

Gene sequence:

>558_bases
TTGAACGCGCATGTCTCACATGGCGGTTGGCCGGTGCTGGTGCTCAACGCGGACTTCCGGCCGCTCAGCTACTATCCGTT
GTCGCTTTGGTCGTGGCAGGACGCGGTCAAAGCGGTGTTCCTTGATCGCGTCAATATCGTCGCCCATTACGACCGTGCGG
TGCACAGCCCGAACCTCGAATTCCGGCTTCCCAGCGTCGTATCTCTGAAATCCTTCGTCAAACCGACCACGAATCCGGCC
TTCACGCGGTTCAACGTGTTCCTGCGCGATCGGTTCGTTTGCCAGTATTGCGGCGCGCCCGACGATCTCACCTTCGATCA
CATCATCCCGCGCTCCAAGGGCGGCCAGACCACCTGGGAGAACGTCGTCGCGGCCTGCTCGCCGTGCAACTTGCGCAAGG
GCAATCTGACGCCCGAGCAAGCCAAGATGTTCCCCCGCCAGACCGCGTTCGCCCCGACAGTCCATCAGCTCCACCGCAAC
GGCCGGCTGTTCCCGCCGAACTATCTGCACGAGAGCTGGCTCGATTACTTATATTGGGACACTGAGCTGGACCCGTAG

Upstream 100 bases:

>100_bases
GGACATTTCTGCATCGCCCTTCACAAGGCCGTCACCCTGACTGTAGTATGCCTTCGCATGCTGCTTCGCAGCGTCGATCG
ACGGGGGTCAGGAGCGTTTC

Downstream 100 bases:

>100_bases
TCCACCCTCGGCCGGAAGCCGGTTCGACTCGGCACGCCGGCGCAGCTTCGCTGCTCGCTTTACACCGCCACCGACAGGCT
GCACTGCTACGCTCGAATTT

Product: HNH endonuclease

Products: NA

Alternate protein names: HNH Endonuclease Family Protein; Endonuclease; HNH Endonuclease Domain Protein; HNH Endonuclease Domain-Containing Protein; Restriction Endonuclease; Hnh Endonuclease; HNH Nuclease; McrA/HNH Family Nuclease; 5-Methylcytosine-Specific Restriction A; 5-Methylcytosine-Specific Restriction Protein; Nuclease; Restriction Endonuclease McrA/HNH Family; HNH EndonucleaseHNH Nuclease; HNH Family Endonuclease; LOW QUALITY PROTEIN Endonuclease; Hnh Endonuclease Domain Protein; 5-Methylcytosine-Specific Restriction Protein A

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MNAHVSHGGWPVLVLNADFRPLSYYPLSLWSWQDAVKAVFLDRVNIVAHYDRAVHSPNLEFRLPSVVSLKSFVKPTTNPA
FTRFNVFLRDRFVCQYCGAPDDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLTPEQAKMFPRQTAFAPTVHQLHRN
GRLFPPNYLHESWLDYLYWDTELDP

Sequences:

>Translated_185_residues
MNAHVSHGGWPVLVLNADFRPLSYYPLSLWSWQDAVKAVFLDRVNIVAHYDRAVHSPNLEFRLPSVVSLKSFVKPTTNPA
FTRFNVFLRDRFVCQYCGAPDDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLTPEQAKMFPRQTAFAPTVHQLHRN
GRLFPPNYLHESWLDYLYWDTELDP
>Mature_185_residues
MNAHVSHGGWPVLVLNADFRPLSYYPLSLWSWQDAVKAVFLDRVNIVAHYDRAVHSPNLEFRLPSVVSLKSFVKPTTNPA
FTRFNVFLRDRFVCQYCGAPDDLTFDHIIPRSKGGQTTWENVVAACSPCNLRKGNLTPEQAKMFPRQTAFAPTVHQLHRN
GRLFPPNYLHESWLDYLYWDTELDP

Specific function: Unknown

COG id: COG1403

COG function: function code V; Restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21316; Mature: 21316

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAHVSHGGWPVLVLNADFRPLSYYPLSLWSWQDAVKAVFLDRVNIVAHYDRAVHSPNLE
CCCCCCCCCCEEEEECCCCCCCEECCCCHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
FRLPSVVSLKSFVKPTTNPAFTRFNVFLRDRFVCQYCGAPDDLTFDHIIPRSKGGQTTWE
EECCHHHHHHHHHCCCCCCCHHHEEHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHH
NVVAACSPCNLRKGNLTPEQAKMFPRQTAFAPTVHQLHRNGRLFPPNYLHESWLDYLYWD
HHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHEECC
TELDP
CCCCC
>Mature Secondary Structure
MNAHVSHGGWPVLVLNADFRPLSYYPLSLWSWQDAVKAVFLDRVNIVAHYDRAVHSPNLE
CCCCCCCCCCEEEEECCCCCCCEECCCCHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
FRLPSVVSLKSFVKPTTNPAFTRFNVFLRDRFVCQYCGAPDDLTFDHIIPRSKGGQTTWE
EECCHHHHHHHHHCCCCCCCHHHEEHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHH
NVVAACSPCNLRKGNLTPEQAKMFPRQTAFAPTVHQLHRNGRLFPPNYLHESWLDYLYWD
HHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHEECC
TELDP
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA