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The map label for this gene is xylH [H]

Identifier: 190895038

GI number: 190895038

Start: 763309

End: 764430

Strand: Reverse

Name: xylH [H]

Synonym: RHECIAT_PC0000704

Alternate gene names: 190895038

Gene position: 764430-763309 (Counterclockwise)

Preceding gene: 190895039

Following gene: 190895037

Centisome position: 70.03

GC content: 59.89

Gene sequence:

>1122_bases
ATGGCTTCGCTTGAGCAGAACACGGCGGCTGCGCCGACGGTCGATGAGCGCGTCAAACAAGTGAGTTTTTTAACACATGT
GATGCGGCGGCCGGAACTGGGTGCGGTCGCCGGCCTTGTCTTCGTCATCGTGTTTTTCTTTCTTACTGCAGATTCGACGA
TGTTCTCCCTTTCCGGCCTGATGACAATCATGGCGCCGGCATCGCAACTGGGAATCCTCGCCATAGCGGCGGCACTGCTC
ATGATCGGCGGAGAGTTCGATCTCTCGATCGGCTCGATGGTGGCTTTCGCAGGATTGATCTTCGGCGTCATCCTGACCAA
TTTCGGTCAACCCCTTTCGGTTGCCATCGTCATGACGATGCTGTTTGCGGCGTTCATGGGCGCGATCAATGGTCAGATCG
TCATCCACACCCGCCTGCCGTCGTTCATCGTGACCCTGGCATTTTTGTTCATACTGCGCGGCTTGACCCTCGTCGGTCTG
AAATGGGCCACCGGCGGCTCGACTCAGCTTCGCGGCATAGGCGATCATGTGAAGGACAGTCCGCTGCTCGGGCTCTTTTC
CGGCGATGCGCTGAAGGGCCTATTCGTCTGGCTTGCAGATCACGATCTGATCGACAAGTTCCCCAATGGCCTGCCGAAGG
TCACGGGCATCCCGGTGTCGGTCTTGTGGTTCGTCGTGCTTGCCCTGGCTGCAACCTGGGTCCTGCTGCGCACCCGCATG
GGCAACTGGATCTTCGCGGCCGGTGGCGATCCGAATGCAGCAAGAAACTCAGGTGTCCCTGTCCATAGGGTGAAGACCGG
CCTGTTCGCGCTGACGGCATGTGCCGCCGCGCTGGTCGCCATCATCACCGTGCTTGACGCCGGCTCGACCGACGCCCGAC
GGGGTTTTCAGAAGGAGTTCGAGGCGATCATCGCCGCCGTTATCGGCGGATGCCTGCTCACAGGCGGATACGGCTCGGCG
ATCGGCGCCTTCTTCGGAGCGATCATCTTCGGCTCGGTATCCATCGGCCTCACCTATACCAGGTTCGACTCCGACTGGTT
CCAGGTCTTCCTCGGCTCGATGCTGCTGCTGGCTGTTCTCTTCAACAATTTCATCCGCCGCAAGGTTACCGGGGAGCGCT
GA

Upstream 100 bases:

>100_bases
CTCGAGAATCTCCTCCCCTCGAGGGGAGGGGGTTCGGTTGAAAGAGCGCTGCCGAGCAGCGCCGCCGCTACCTCAAAACA
AAGATTACATCGGAGGAGTT

Downstream 100 bases:

>100_bases
TCATGCCAGACGTCAATAACCGAACGCCGATCATCGAAGTAACCGATATCGTCAAGCACTACGGCTCGGTGATCGCTCTC
AACGGCGTGTCGATGCACGT

Product: putative sugar ABC transporter permease

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MASLEQNTAAAPTVDERVKQVSFLTHVMRRPELGAVAGLVFVIVFFFLTADSTMFSLSGLMTIMAPASQLGILAIAAALL
MIGGEFDLSIGSMVAFAGLIFGVILTNFGQPLSVAIVMTMLFAAFMGAINGQIVIHTRLPSFIVTLAFLFILRGLTLVGL
KWATGGSTQLRGIGDHVKDSPLLGLFSGDALKGLFVWLADHDLIDKFPNGLPKVTGIPVSVLWFVVLALAATWVLLRTRM
GNWIFAAGGDPNAARNSGVPVHRVKTGLFALTACAAALVAIITVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSA
IGAFFGAIIFGSVSIGLTYTRFDSDWFQVFLGSMLLLAVLFNNFIRRKVTGER

Sequences:

>Translated_373_residues
MASLEQNTAAAPTVDERVKQVSFLTHVMRRPELGAVAGLVFVIVFFFLTADSTMFSLSGLMTIMAPASQLGILAIAAALL
MIGGEFDLSIGSMVAFAGLIFGVILTNFGQPLSVAIVMTMLFAAFMGAINGQIVIHTRLPSFIVTLAFLFILRGLTLVGL
KWATGGSTQLRGIGDHVKDSPLLGLFSGDALKGLFVWLADHDLIDKFPNGLPKVTGIPVSVLWFVVLALAATWVLLRTRM
GNWIFAAGGDPNAARNSGVPVHRVKTGLFALTACAAALVAIITVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSA
IGAFFGAIIFGSVSIGLTYTRFDSDWFQVFLGSMLLLAVLFNNFIRRKVTGER
>Mature_372_residues
ASLEQNTAAAPTVDERVKQVSFLTHVMRRPELGAVAGLVFVIVFFFLTADSTMFSLSGLMTIMAPASQLGILAIAAALLM
IGGEFDLSIGSMVAFAGLIFGVILTNFGQPLSVAIVMTMLFAAFMGAINGQIVIHTRLPSFIVTLAFLFILRGLTLVGLK
WATGGSTQLRGIGDHVKDSPLLGLFSGDALKGLFVWLADHDLIDKFPNGLPKVTGIPVSVLWFVVLALAATWVLLRTRMG
NWIFAAGGDPNAARNSGVPVHRVKTGLFALTACAAALVAIITVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSAI
GAFFGAIIFGSVSIGLTYTRFDSDWFQVFLGSMLLLAVLFNNFIRRKVTGER

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=373, Percent_Identity=30.0268096514745, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790191, Length=324, Percent_Identity=29.6296296296296, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788896, Length=356, Percent_Identity=29.7752808988764, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI87082395, Length=326, Percent_Identity=26.6871165644172, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1790524, Length=281, Percent_Identity=27.4021352313167, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787794, Length=339, Percent_Identity=26.8436578171091, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787793, Length=321, Percent_Identity=28.9719626168224, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI145693152, Length=301, Percent_Identity=26.578073089701, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788471, Length=366, Percent_Identity=27.8688524590164, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 39556; Mature: 39425

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLEQNTAAAPTVDERVKQVSFLTHVMRRPELGAVAGLVFVIVFFFLTADSTMFSLSGL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
MTIMAPASQLGILAIAAALLMIGGEFDLSIGSMVAFAGLIFGVILTNFGQPLSVAIVMTM
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LFAAFMGAINGQIVIHTRLPSFIVTLAFLFILRGLTLVGLKWATGGSTQLRGIGDHVKDS
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCC
PLLGLFSGDALKGLFVWLADHDLIDKFPNGLPKVTGIPVSVLWFVVLALAATWVLLRTRM
CCEEEECCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
GNWIFAAGGDPNAARNSGVPVHRVKTGLFALTACAAALVAIITVLDAGSTDARRGFQKEF
CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
EAIIAAVIGGCLLTGGYGSAIGAFFGAIIFGSVSIGLTYTRFDSDWFQVFLGSMLLLAVL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHH
FNNFIRRKVTGER
HHHHHHHHCCCCC
>Mature Secondary Structure 
ASLEQNTAAAPTVDERVKQVSFLTHVMRRPELGAVAGLVFVIVFFFLTADSTMFSLSGL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
MTIMAPASQLGILAIAAALLMIGGEFDLSIGSMVAFAGLIFGVILTNFGQPLSVAIVMTM
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LFAAFMGAINGQIVIHTRLPSFIVTLAFLFILRGLTLVGLKWATGGSTQLRGIGDHVKDS
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCC
PLLGLFSGDALKGLFVWLADHDLIDKFPNGLPKVTGIPVSVLWFVVLALAATWVLLRTRM
CCEEEECCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
GNWIFAAGGDPNAARNSGVPVHRVKTGLFALTACAAALVAIITVLDAGSTDARRGFQKEF
CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
EAIIAAVIGGCLLTGGYGSAIGAFFGAIIFGSVSIGLTYTRFDSDWFQVFLGSMLLLAVL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHH
FNNFIRRKVTGER
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]