Click here to switch to the map view.

The map label for this gene is ygbM [C]

Identifier: 190895036

GI number: 190895036

Start: 761633

End: 762448

Strand: Reverse

Name: ygbM [C]

Synonym: RHECIAT_PC0000702

Alternate gene names: 190895036

Gene position: 762448-761633 (Counterclockwise)

Preceding gene: 190895037

Following gene: 190895035

Centisome position: 69.85

GC content: 59.93

Gene sequence:

>816_bases
ATGGAAATGGTCATGAACGACGGTCCGTCGAATACATCATCCCCCTTCACGCTCGCAGTCTGCGCCGAAATGGTCTTCAA
GTCGCTTCCTGTTATCGACAGGTTGAAGCGTATCAGTGAACTCGGCTTTCAGGCCGAAATCTGGGATTGGACAAAACACG
ACATCGCCGCGCTTGCGCGATCGGGAGCCATCTTTTCGTCAATGACGGGCTATGTGTCCGGCACACTTGCCGATGACGAA
GGCGCGGATGAATTGCTGCGAACCGCGAAGTTATCGATCCCCGTCGCCCGACAGCTGAATTGCCCGCGTCTCAACCTGCA
TGGCACCGGTCTCGACGGCAACGGGCTGCCGGTCGTCAAGGCCGACCAGGTGACGGGTTCCATGTGGCTCAAGGCGCGCG
ATACGCTGAACCGTATCGCCGACCTCGGCGAGCAGGAGGGTGTTACCTTCGTGCTTGAAAACCTCAATCAGGCAGTCAAT
CATCCCAAGACCCCCTTTGCCAAGGCCGAGGATACGCTCGCCCTCGTCTCCTCCGTTAACCGGCCGACGCTGAAGCTCAA
TCTCGACCTCTATCATGCCCAGATCGGCGAGGGGAACCTGATCGAGCTGTGCCGGCGTGCACTCCCATTTATCGGCGAGA
TTCAGGTGGCGGATGTTCCCGGTCGCATGGAACCGGGCACCGGAGAGATCAACTACCAGGCAATCGCCCGGGCGCTCAAG
GACATGGGTTATCGGGGCGCGATCGGCATGGAGGCTTGGGCCTCGGGTGATGACGAGACGGCGCTTGCCCGCTTCCGCGA
CGCCTTCACCGTTTGA

Upstream 100 bases:

>100_bases
GCAGCAACTGTCCGACGAGCTCGGCGGCACGATTTAGCCCTGCATATCCCGCGGCGCCCGATTGGTCTTTGTCAGGCTGC
CGCATTCTCAATTATCAAAC

Downstream 100 bases:

>100_bases
AGATTTGGATAGTCAAGACTTACAGTTAATGGAGAGACATCAATGATCAGATTTGGAGTGATCGGCGCCGGCCGAATAGG
CAAAGTGCATGCCACAACGA

Product: putative xylose isomerase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MEMVMNDGPSNTSSPFTLAVCAEMVFKSLPVIDRLKRISELGFQAEIWDWTKHDIAALARSGAIFSSMTGYVSGTLADDE
GADELLRTAKLSIPVARQLNCPRLNLHGTGLDGNGLPVVKADQVTGSMWLKARDTLNRIADLGEQEGVTFVLENLNQAVN
HPKTPFAKAEDTLALVSSVNRPTLKLNLDLYHAQIGEGNLIELCRRALPFIGEIQVADVPGRMEPGTGEINYQAIARALK
DMGYRGAIGMEAWASGDDETALARFRDAFTV

Sequences:

>Translated_271_residues
MEMVMNDGPSNTSSPFTLAVCAEMVFKSLPVIDRLKRISELGFQAEIWDWTKHDIAALARSGAIFSSMTGYVSGTLADDE
GADELLRTAKLSIPVARQLNCPRLNLHGTGLDGNGLPVVKADQVTGSMWLKARDTLNRIADLGEQEGVTFVLENLNQAVN
HPKTPFAKAEDTLALVSSVNRPTLKLNLDLYHAQIGEGNLIELCRRALPFIGEIQVADVPGRMEPGTGEINYQAIARALK
DMGYRGAIGMEAWASGDDETALARFRDAFTV
>Mature_271_residues
MEMVMNDGPSNTSSPFTLAVCAEMVFKSLPVIDRLKRISELGFQAEIWDWTKHDIAALARSGAIFSSMTGYVSGTLADDE
GADELLRTAKLSIPVARQLNCPRLNLHGTGLDGNGLPVVKADQVTGSMWLKARDTLNRIADLGEQEGVTFVLENLNQAVN
HPKTPFAKAEDTLALVSSVNRPTLKLNLDLYHAQIGEGNLIELCRRALPFIGEIQVADVPGRMEPGTGEINYQAIARALK
DMGYRGAIGMEAWASGDDETALARFRDAFTV

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Homo sapiens, GI300068962, Length=192, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI300068964, Length=172, Percent_Identity=34.3023255813954, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1789095, Length=260, Percent_Identity=27.3076923076923, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786718, Length=258, Percent_Identity=24.8062015503876, Blast_Score=71, Evalue=7e-14,
Organism=Drosophila melanogaster, GI17530883, Length=175, Percent_Identity=31.4285714285714, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 29446; Mature: 29446

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMVMNDGPSNTSSPFTLAVCAEMVFKSLPVIDRLKRISELGFQAEIWDWTKHDIAALAR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHH
SGAIFSSMTGYVSGTLADDEGADELLRTAKLSIPVARQLNCPRLNLHGTGLDGNGLPVVK
CCHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCCHHHCCCCCEEEEEECCCCCCCCCEEE
ADQVTGSMWLKARDTLNRIADLGEQEGVTFVLENLNQAVNHPKTPFAKAEDTLALVSSVN
ECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
RPTLKLNLDLYHAQIGEGNLIELCRRALPFIGEIQVADVPGRMEPGTGEINYQAIARALK
CCEEEEEEEEEEEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH
DMGYRGAIGMEAWASGDDETALARFRDAFTV
HCCCCCCCCCHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MEMVMNDGPSNTSSPFTLAVCAEMVFKSLPVIDRLKRISELGFQAEIWDWTKHDIAALAR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHH
SGAIFSSMTGYVSGTLADDEGADELLRTAKLSIPVARQLNCPRLNLHGTGLDGNGLPVVK
CCHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCCHHHCCCCCEEEEEECCCCCCCCCEEE
ADQVTGSMWLKARDTLNRIADLGEQEGVTFVLENLNQAVNHPKTPFAKAEDTLALVSSVN
ECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
RPTLKLNLDLYHAQIGEGNLIELCRRALPFIGEIQVADVPGRMEPGTGEINYQAIARALK
CCEEEEEEEEEEEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH
DMGYRGAIGMEAWASGDDETALARFRDAFTV
HCCCCCCCCCHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]