Definition Rhizobium etli CIAT 652 plasmid pC, complete sequence.
Accession NC_010997
Length 1,091,523

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The map label for this gene is yusZ [H]

Identifier: 190895025

GI number: 190895025

Start: 749294

End: 750043

Strand: Reverse

Name: yusZ [H]

Synonym: RHECIAT_PC0000691

Alternate gene names: 190895025

Gene position: 750043-749294 (Counterclockwise)

Preceding gene: 190895027

Following gene: 190895021

Centisome position: 68.72

GC content: 62.93

Gene sequence:

>750_bases
ATGAAGACGGTTCTCGTTACAGGATGCTCGTCGGGGTTCGGGCTGGAAATTGCCAGGTTCTTTCTCGCGCATGGCTGGAA
GGTGATCGCCACCATGCGAACGCGGCGCCAAGACCTTCTGCCGATCTCGGACCATCTCAAGATCGTTGCGCTGGATGTCA
CGAGCCCTGAAAGCATCCGCGCTGCGGTTGAGACCGCTGGTCGTGTGGATGTGCTGGTCAACAACGCCGGCATCGGCTGG
CTCAACGCCGTTGAGGGAACGCCAATTGAGATCGCTCGCGATGTTTTTGAGACGAACACTCTCGGAACGATCGCGATGAC
GCAAGCGGTTCTGCCGCAGATGCGGGAGCGGCGGGAGGGGGTCATCGTCAACATCACGTCGAGCGTGACGCTCAAGCCGC
TCCCGCTCCTCTCGGTCTATACGGCCAGCAAAGCCGCGGTGAACGCCTTCACCGAGTCTGCCGCGCTCGAGCTAGAGCCA
TTCAATGTGCGCGTGAGGATCGTGCTCCCGGGGCGCGCGCCGGAGACGCGGTTCGGCGATACCGCGCGCTCACGGCTTCA
ACAACAGGGCGGCTTCCCGGAGGCTTATTCGTCGGTCGTCGCAGACGTATTCGCGTCCTGGGAGCAGCAATCGGCGACCG
CTCTGACGCAGCCCGTCGACGTCGTCGAGGCAGTATGGCGCGCTGCGACCGATCCTTCCTCTCCGTTGCGCATCCCTGCA
GGCGTCGACGCCGAAGCATTGGCGGTATGA

Upstream 100 bases:

>100_bases
CTCATCGATACGCCTGATAATGAAACGTGGACGATGCATGATATTCAGTAGCGATATCGCCGTCTACATCTATCGCCGTC
AGCATGGATAGGAGACAGAT

Downstream 100 bases:

>100_bases
AGGCGGCGGCCCCTTAAGGTCGCCGGCGCAGAACGTACAGCAGCATCGGCGCCCCGACCAGGGCCGAGATCAATCCCGCA
GGGACCTGGTAGGGGAAGGC

Product: putative dehydrogenase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKTVLVTGCSSGFGLEIARFFLAHGWKVIATMRTRRQDLLPISDHLKIVALDVTSPESIRAAVETAGRVDVLVNNAGIGW
LNAVEGTPIEIARDVFETNTLGTIAMTQAVLPQMRERREGVIVNITSSVTLKPLPLLSVYTASKAAVNAFTESAALELEP
FNVRVRIVLPGRAPETRFGDTARSRLQQQGGFPEAYSSVVADVFASWEQQSATALTQPVDVVEAVWRAATDPSSPLRIPA
GVDAEALAV

Sequences:

>Translated_249_residues
MKTVLVTGCSSGFGLEIARFFLAHGWKVIATMRTRRQDLLPISDHLKIVALDVTSPESIRAAVETAGRVDVLVNNAGIGW
LNAVEGTPIEIARDVFETNTLGTIAMTQAVLPQMRERREGVIVNITSSVTLKPLPLLSVYTASKAAVNAFTESAALELEP
FNVRVRIVLPGRAPETRFGDTARSRLQQQGGFPEAYSSVVADVFASWEQQSATALTQPVDVVEAVWRAATDPSSPLRIPA
GVDAEALAV
>Mature_249_residues
MKTVLVTGCSSGFGLEIARFFLAHGWKVIATMRTRRQDLLPISDHLKIVALDVTSPESIRAAVETAGRVDVLVNNAGIGW
LNAVEGTPIEIARDVFETNTLGTIAMTQAVLPQMRERREGVIVNITSSVTLKPLPLLSVYTASKAAVNAFTESAALELEP
FNVRVRIVLPGRAPETRFGDTARSRLQQQGGFPEAYSSVVADVFASWEQQSATALTQPVDVVEAVWRAATDPSSPLRIPA
GVDAEALAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=260, Percent_Identity=35, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=34.3915343915344, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI223718074, Length=182, Percent_Identity=37.9120879120879, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI44680136, Length=185, Percent_Identity=36.2162162162162, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI44680133, Length=185, Percent_Identity=36.2162162162162, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI17738292, Length=185, Percent_Identity=36.2162162162162, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI119392083, Length=188, Percent_Identity=34.0425531914894, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI19743808, Length=275, Percent_Identity=31.2727272727273, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI7706318, Length=184, Percent_Identity=33.1521739130435, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI150247226, Length=273, Percent_Identity=32.967032967033, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI22507405, Length=272, Percent_Identity=30.8823529411765, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40548397, Length=180, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI214010158, Length=180, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI214010156, Length=180, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI22758144, Length=180, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI7705855, Length=181, Percent_Identity=32.0441988950276, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI10190704, Length=188, Percent_Identity=29.7872340425532, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI157739938, Length=184, Percent_Identity=27.7173913043478, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI32483357, Length=185, Percent_Identity=30.2702702702703, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI4503817, Length=199, Percent_Identity=28.643216080402, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI7705925, Length=172, Percent_Identity=31.9767441860465, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI33667109, Length=182, Percent_Identity=30.2197802197802, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031737, Length=182, Percent_Identity=30.2197802197802, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4557649, Length=133, Percent_Identity=34.5864661654135, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI40254992, Length=216, Percent_Identity=29.6296296296296, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI50726952, Length=191, Percent_Identity=35.0785340314136, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4504503, Length=186, Percent_Identity=27.9569892473118, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1787820, Length=245, Percent_Identity=35.9183673469388, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787335, Length=178, Percent_Identity=37.0786516853933, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=32.5396825396825, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1786701, Length=187, Percent_Identity=33.6898395721925, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786812, Length=170, Percent_Identity=31.7647058823529, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790717, Length=180, Percent_Identity=31.6666666666667, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788459, Length=187, Percent_Identity=30.4812834224599, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=185, Percent_Identity=32.4324324324324, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=208, Percent_Identity=31.7307692307692, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=188, Percent_Identity=34.0425531914894, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=226, Percent_Identity=31.4159292035398, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=231, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=192, Percent_Identity=33.8541666666667, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=223, Percent_Identity=30.4932735426009, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=240, Percent_Identity=28.75, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=188, Percent_Identity=32.4468085106383, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=188, Percent_Identity=32.9787234042553, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=199, Percent_Identity=31.6582914572864, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=246, Percent_Identity=29.2682926829268, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=189, Percent_Identity=30.1587301587302, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=243, Percent_Identity=29.2181069958848, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=245, Percent_Identity=29.7959183673469, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=187, Percent_Identity=30.4812834224599, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17557780, Length=210, Percent_Identity=30.4761904761905, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=222, Percent_Identity=28.3783783783784, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=187, Percent_Identity=31.5508021390374, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=201, Percent_Identity=30.3482587064677, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17559962, Length=203, Percent_Identity=32.0197044334975, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI72001658, Length=199, Percent_Identity=29.1457286432161, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=177, Percent_Identity=32.7683615819209, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=188, Percent_Identity=31.9148936170213, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI32563809, Length=188, Percent_Identity=31.9148936170213, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=243, Percent_Identity=27.5720164609054, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=36.2694300518135, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=250, Percent_Identity=27.6, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21358495, Length=187, Percent_Identity=33.6898395721925, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI23397609, Length=178, Percent_Identity=35.9550561797753, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28574402, Length=215, Percent_Identity=30.6976744186047, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24584744, Length=215, Percent_Identity=30.6976744186047, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI21357041, Length=209, Percent_Identity=33.9712918660287, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI161076933, Length=216, Percent_Identity=29.6296296296296, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24584748, Length=216, Percent_Identity=29.6296296296296, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24651139, Length=192, Percent_Identity=29.6875, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=30.1587301587302, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24643142, Length=172, Percent_Identity=30.2325581395349, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24640442, Length=211, Percent_Identity=28.9099526066351, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24639444, Length=183, Percent_Identity=33.879781420765, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=28.8537549407115, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI116007236, Length=188, Percent_Identity=31.9148936170213, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=30.9782608695652, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641232, Length=194, Percent_Identity=34.020618556701, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24644337, Length=169, Percent_Identity=33.7278106508876, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26765; Mature: 26765

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MKTVLVTGCSSGFGLEIARFFLAHGWKVIATMRTRRQDLLPISDHLKIVALDVTSPESIR
CCEEEEECCCCCCCHHHHHHHHHCCHHEEEHHHHHHHCCCCCCCCEEEEEEECCCCHHHH
AAVETAGRVDVLVNNAGIGWLNAVEGTPIEIARDVFETNTLGTIAMTQAVLPQMRERREG
HHHHCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
VIVNITSSVTLKPLPLLSVYTASKAAVNAFTESAALELEPFNVRVRIVLPGRAPETRFGD
EEEEEECCCEECCCCCEEEHHHHHHHHHHHHHCCEEEEECCEEEEEEEECCCCCCCCCCH
TARSRLQQQGGFPEAYSSVVADVFASWEQQSATALTQPVDVVEAVWRAATDPSSPLRIPA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEECCC
GVDAEALAV
CCCHHHHCC
>Mature Secondary Structure
MKTVLVTGCSSGFGLEIARFFLAHGWKVIATMRTRRQDLLPISDHLKIVALDVTSPESIR
CCEEEEECCCCCCCHHHHHHHHHCCHHEEEHHHHHHHCCCCCCCCEEEEEEECCCCHHHH
AAVETAGRVDVLVNNAGIGWLNAVEGTPIEIARDVFETNTLGTIAMTQAVLPQMRERREG
HHHHCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
VIVNITSSVTLKPLPLLSVYTASKAAVNAFTESAALELEPFNVRVRIVLPGRAPETRFGD
EEEEEECCCEECCCCCEEEHHHHHHHHHHHHHCCEEEEECCEEEEEEEECCCCCCCCCCH
TARSRLQQQGGFPEAYSSVVADVFASWEQQSATALTQPVDVVEAVWRAATDPSSPLRIPA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEECCC
GVDAEALAV
CCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]