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The map label for this gene is rpoI

Identifier: 190895021

GI number: 190895021

Start: 745140

End: 745796

Strand: Reverse

Name: rpoI

Synonym: RHECIAT_PC0000687

Alternate gene names: NA

Gene position: 745796-745140 (Counterclockwise)

Preceding gene: 190895025

Following gene: 190895017

Centisome position: 68.33

GC content: 58.14

Gene sequence:

>657_bases
ATGCGAGCATCGCATCGTGATGTGAACGGAAATGCCGTGGTCAACGCCATGATCGAAAACAAGGATAAGCTCCTGAAGAC
GATCGAAAGCGTTGTTAAATCAAGGTCATATTCTGAAGATATATTTCAGGACGGCGTGATCAAAGCTTACGGGGTCAAAA
CCGACGACATCCGTTGCCCGATCGGTTACGCATTTCGGATGGTCTATAATCTCGCCCTCGACGAGAGCCGCCGACGGCGC
CAGCGGGTGAACAACTATAGGTCGATCGACCAGGTTCAAGAAATGACGGCGCCCATCCCCACCGTGCTCGATCAGCTGGT
CGCCGCCGAGACCCTTCGTGATGTGCTTGCCTCGCTCGAGGCGCTGCCGAAGCGCACCAACGACGCCTTCATCCGCCATC
GCCTGAACGGCGTGCCCCAGAAGGATATCGCAGCCGAACTCGGTGTCTCCCGGACACTCGTCAATTTCATGATCAAGGCG
GCGGAGCAGCATTGCCATTTGGCAATGGCCGAGCCTGCCCACCCCGATCACGAGCGCCCGCGGGATATCACCGCTTCGCG
GCGTGCAGCGCCTGCTGCAAATCGTTCCACAGCAATTCCGGCTCTTCCAGCCCAACAGCGAAACGGATCGTCTGCTCGCT
CACGCCGAACCGGATGA

Upstream 100 bases:

>100_bases
CAATCACATCGTGTACCTTTGTTAAAAAAGGAACACCGAGGCCGAACCGACCAGCAACGACAGAGCCTGATTTTTCCATT
TGTAAAAAGGGTACAGGACA

Downstream 100 bases:

>100_bases
AAGTGGTCATCCGGTCGGGGATCTGCAGTGCGACCTTGGCCGGAACGACCAGCGTTTCCGGTCCTCCCCAGCTGACCCCG
AGGCGGATCTCGCGAAGCGC

Product: RNA polymerase sigma factor protein

Products: NA

Alternate protein names: Extracytoplasmic-Function Sigma-70 Factor PvdS; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Ferric Regulator Sigma-24 Subunit; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MRASHRDVNGNAVVNAMIENKDKLLKTIESVVKSRSYSEDIFQDGVIKAYGVKTDDIRCPIGYAFRMVYNLALDESRRRR
QRVNNYRSIDQVQEMTAPIPTVLDQLVAAETLRDVLASLEALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKA
AEQHCHLAMAEPAHPDHERPRDITASRRAAPAANRSTAIPALPAQQRNGSSARSRRTG

Sequences:

>Translated_218_residues
MRASHRDVNGNAVVNAMIENKDKLLKTIESVVKSRSYSEDIFQDGVIKAYGVKTDDIRCPIGYAFRMVYNLALDESRRRR
QRVNNYRSIDQVQEMTAPIPTVLDQLVAAETLRDVLASLEALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKA
AEQHCHLAMAEPAHPDHERPRDITASRRAAPAANRSTAIPALPAQQRNGSSARSRRTG
>Mature_218_residues
MRASHRDVNGNAVVNAMIENKDKLLKTIESVVKSRSYSEDIFQDGVIKAYGVKTDDIRCPIGYAFRMVYNLALDESRRRR
QRVNNYRSIDQVQEMTAPIPTVLDQLVAAETLRDVLASLEALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKA
AEQHCHLAMAEPAHPDHERPRDITASRRAAPAANRSTAIPALPAQQRNGSSARSRRTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24351; Mature: 24351

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASHRDVNGNAVVNAMIENKDKLLKTIESVVKSRSYSEDIFQDGVIKAYGVKTDDIRCP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCC
IGYAFRMVYNLALDESRRRRQRVNNYRSIDQVQEMTAPIPTVLDQLVAAETLRDVLASLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKAAEQHCHLAMAEPAHPDHERP
HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCC
RDITASRRAAPAANRSTAIPALPAQQRNGSSARSRRTG
CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MRASHRDVNGNAVVNAMIENKDKLLKTIESVVKSRSYSEDIFQDGVIKAYGVKTDDIRCP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCC
IGYAFRMVYNLALDESRRRRQRVNNYRSIDQVQEMTAPIPTVLDQLVAAETLRDVLASLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKAAEQHCHLAMAEPAHPDHERP
HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCC
RDITASRRAAPAANRSTAIPALPAQQRNGSSARSRRTG
CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA