Click here to switch to the map view.

The map label for this gene is raiR [H]

Identifier: 190894996

GI number: 190894996

Start: 715276

End: 716001

Strand: Reverse

Name: raiR [H]

Synonym: RHECIAT_PC0000662

Alternate gene names: 190894996

Gene position: 716001-715276 (Counterclockwise)

Preceding gene: 190894997

Following gene: 190894994

Centisome position: 65.6

GC content: 60.61

Gene sequence:

>726_bases
ATGCTGAGCAGTTCTCGTTTTTTCTACTGTCTGGACCGGATCTCCGCATCGCCGACATTGCAGGATCTGGAAACGACGCT
GGACGAAGTCCGCCACATCTATGCGATATCGCATATGGTTCTCCATGTGACCCGCTTCGCGGGCGCCACGGACAGCAATC
CCCTGCTGATGCTGACCTATCCGCCCGAGTGGGTGAAACAATATCGTGACCGGGACTACTTCAGCATCGACCCCGTCGTG
CGTCTCGGCCGGCGTGGCTTCCTGCCCGTGGAATGGTCCGCATCAGGATGGGATTCAGGCCGAGCCTATGGCTTCTTCAA
GGAGGCCATGGCCTTCGGTGTCGGCCGGCAAGGCGTTACCCTGCCCGTGCGCGGACCGCAGGGGGAGCGATCGCTGTTTA
CGGTGACCTCCAACCACCCCGACGCCTATTGGCGGCAATTCCGCATGGACAGCATGCGCGACCTGCAGTTTCTCGCCCAC
CATCTCCACGATCGAGCCATGGTCTTGTCGGGCATGAGAAAAGTTGCGGATTTGCCGCGATTGTCACGCCGCGAACTGCA
ATGCCTGGAGATGACCGCCAATGGCTTGCTGGCCAAGCAGATCTGCGCCCGCTTGTCCATTTCGGTCAGCGCAGTCCAAC
TCTATCTCGCCTCGGCGCGCCGGAAGCTGACCGTTGCCACGACGAGCGAAGCAGTTGCTCGGGCCACGGCGCTCGAACTG
ATATAA

Upstream 100 bases:

>100_bases
TCATATCGCGCCATGGTTGCCAAAAATATACTGTTCTCGGTAATCGTGAAATGTTACCATCGCGAGCAGTTCAAAAAATA
CGCAACCACGAGTCCATCTC

Downstream 100 bases:

>100_bases
GCGTGCCGATCCCTGTTTATCGCCGGCCCTTGGTGCGTGTCGCCAGAACGTTGCGAATCGAAAAGCTGGAATGAATCCTC
AGAACGCCGGGCAAGGTCGA

Product: transcriptional activator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLSSSRFFYCLDRISASPTLQDLETTLDEVRHIYAISHMVLHVTRFAGATDSNPLLMLTYPPEWVKQYRDRDYFSIDPVV
RLGRRGFLPVEWSASGWDSGRAYGFFKEAMAFGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAH
HLHDRAMVLSGMRKVADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALEL
I

Sequences:

>Translated_241_residues
MLSSSRFFYCLDRISASPTLQDLETTLDEVRHIYAISHMVLHVTRFAGATDSNPLLMLTYPPEWVKQYRDRDYFSIDPVV
RLGRRGFLPVEWSASGWDSGRAYGFFKEAMAFGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAH
HLHDRAMVLSGMRKVADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALEL
I
>Mature_241_residues
MLSSSRFFYCLDRISASPTLQDLETTLDEVRHIYAISHMVLHVTRFAGATDSNPLLMLTYPPEWVKQYRDRDYFSIDPVV
RLGRRGFLPVEWSASGWDSGRAYGFFKEAMAFGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAH
HLHDRAMVLSGMRKVADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALEL
I

Specific function: Activates Cell Division By Specifically Increasing Transcription From One Of The Two Promoters That Lie Immediately Upstream Of The Ftsqaz Gene Cluster. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27317; Mature: 27317

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSSRFFYCLDRISASPTLQDLETTLDEVRHIYAISHMVLHVTRFAGATDSNPLLMLTY
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
PPEWVKQYRDRDYFSIDPVVRLGRRGFLPVEWSASGWDSGRAYGFFKEAMAFGVGRQGVT
CHHHHHHHHCCCCCEECHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCE
LPVRGPQGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRAMVLSGMRKVADLPR
EEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALEL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHC
I
C
>Mature Secondary Structure
MLSSSRFFYCLDRISASPTLQDLETTLDEVRHIYAISHMVLHVTRFAGATDSNPLLMLTY
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
PPEWVKQYRDRDYFSIDPVVRLGRRGFLPVEWSASGWDSGRAYGFFKEAMAFGVGRQGVT
CHHHHHHHHCCCCCEECHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCE
LPVRGPQGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRAMVLSGMRKVADLPR
EEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALEL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9473034 [H]