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The map label for this gene is virD4 [H]

Identifier: 190571635

GI number: 190571635

Start: 1332043

End: 1334061

Strand: Direct

Name: virD4 [H]

Synonym: WPa_1259

Alternate gene names: 190571635

Gene position: 1332043-1334061 (Clockwise)

Preceding gene: 190571634

Following gene: 190571638

Centisome position: 89.85

GC content: 36.75

Gene sequence:

>2019_bases
ATGAGTAATGGAAATCACCTACGCAATATTCTCATAGGAGGTGTAGTATCTTTTAGCATACTTGAATTTTGCTTCTATTT
GTCTGGTATATTATTCTACCTGTTTGTTGACGGTCCAGATGGTGTAGATTTTAGAGCAATTAATCCTAGCTTGACACCTT
TTCCTCAAGCTCTCTGGCCGACAATTTTTGATCATATACAATATTGTTGGCATCATCCAGAGCTATATAGCTTTGAGCTC
AAAATTAAATTAGTTGTATCTTCTGTACTGCCTAAAATTGTTTTGATGATTATTTTGTGGAATGTGAGAGAAAGACTAAT
TGAGTGGCGGCCATTTAAAAAGAAAGAATCACTTCATGGAGATTCACAGTGGGCATCAGAGAAAGACATACGAAAAGCGG
GATTAAGAAGCAAAAAAGGTCTATTGCTTGGTAAAGATAAGAGAGGATATTTTATTGCTGATGGGTTTCAGCATGCATTG
CTCTTTGCACCTACAGGCTCTGGTAAAGGTGTTGGTTTTGTAATTCCTAATTTGTTATTTTGGAATGATTCGGTAATTGT
GCATGATATAAAATTAGAAAACTATGAAATAACAAGTGGTTGGCGAGAGCGACAAGGACAAAAAGTATATGTATGGAACC
CAGCGCAGCCAGATGGGGTAAGCCATTGTTATAATCCACTGGAATGGATTAGTGAAAAACCTGGACAGATGGTTGACGAT
GTGCAAAAAATAGCTAACCTAATCATGCCTGAACAAGATTTTTGGCAAAACGAAGCAAGAAGCTTATTTGTTGGGGTGGT
ACTATATTTACTTGCTGCACCAGAGAAAGTTAAATCTTTTGGTGAGGTTGTGCGTACGATGCGTAGCGATGACGTAGTTT
ACAATCTTGCTGTAGTTTTGGACACAATGGGTAAAATAATACATCCGGTAGCGTATATGAACATTGCAGCTTTTTTGCAA
AAGGCTGACAAAGAAAGATCAGGTGTTGTGTCAACTATGAACTCGTCGCTTGAATTGTGGGCAAACCCATTGATCGATAC
TGCAACTGCATCAAGTGATTTTAATATTTTGGATTTTAAAAAGAAGAAAACTACAGTTTATGTTGGTTTAACTCCTGATA
ACTTAACTAGGCTCAGGCCTTTAATGCAGGTTTTTTACCAACAGGCAACTGAGTTTTTATGTAGAAAATTGCCATCGGAT
GACGAGCCTTACGGCGTATTATTTTTAATGGATGAGTTTCCAACACTTGGAAAAATGGAGCAATTTCAAACGGGCATCGC
ATACTTTCGTGGCTATCGAGTAAGGTTATTTTTAATTGTTCAAGATACTGAACAGCTTAAAGGAATATATGAAGAAGCAG
GAATGAACTCCTTTTTATCAAACTCAACCTATAGAATAACTTTTGCAGCCAATAATATTGAAACGGCTAATTTGATATCT
CAGCTTATAGGAAACAAAACTGTACAACAAGAATCATTAAACAAACCTAAATTTTTAGACTTGAATCCTGCATCAAGATC
ATTGCATATCTCTGAAACACAGAGAGCATTGCTCTTACCTCAAGAAATTATTATGCTGCCACGTGATGATCAGATAATTT
TGATAGAATCGACTTATCCAATTAAGTCAAAGAAAATTTTGTACTATAGTGATAGCACATTCACAAGAAGGCTGATTAAA
CCAACACGTGTGCCTACACAAGAGCCATATGATCCAAACAAGGTCTTTTCTGCTGCTAACAAAGATAAGATTAGTAATGA
AGAAGAGAGTAATGCTATTGAAGCTGCTGATTATCCTGTTGAAGCTAGAACTGAAGATGCAATATACGATGAGCCAGAGA
TTGAAGATGGATTTGAAGACGAGGATATTGATGATAAGTTTGAAGGTGGTGATGGGTTTGATGATGAGGAAGACGATGAT
GGGTTTGATGATGAAGACAGTAAGGATGAATTTGACGATGATGATGAATTTGAAGATGAGGACAAACTAGACGGCAATAA
AATCGAGGATAGAGGTTAA

Upstream 100 bases:

>100_bases
AAGGACCAGTGGTGGAAAAAGAAGCATTTCTGAAATATTATTTACTAGATCTTCAAATGAAAATACTTAAATTTATACGT
AAGTTAAGAAAAAGTAGTTT

Downstream 100 bases:

>100_bases
TTTTACCTATTTTTTAGCTTAGAAAATAATTAGTTTTTTCATATTAAATCATTTTTAATTAATTAGTACTAGATTAGCTA
TTTTAACTAGAGGAATAATC

Product: type IV secretion system component VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 672; Mature: 671

Protein sequence:

>672_residues
MSNGNHLRNILIGGVVSFSILEFCFYLSGILFYLFVDGPDGVDFRAINPSLTPFPQALWPTIFDHIQYCWHHPELYSFEL
KIKLVVSSVLPKIVLMIILWNVRERLIEWRPFKKKESLHGDSQWASEKDIRKAGLRSKKGLLLGKDKRGYFIADGFQHAL
LFAPTGSGKGVGFVIPNLLFWNDSVIVHDIKLENYEITSGWRERQGQKVYVWNPAQPDGVSHCYNPLEWISEKPGQMVDD
VQKIANLIMPEQDFWQNEARSLFVGVVLYLLAAPEKVKSFGEVVRTMRSDDVVYNLAVVLDTMGKIIHPVAYMNIAAFLQ
KADKERSGVVSTMNSSLELWANPLIDTATASSDFNILDFKKKKTTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRKLPSD
DEPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIVQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
QLIGNKTVQQESLNKPKFLDLNPASRSLHISETQRALLLPQEIIMLPRDDQIILIESTYPIKSKKILYYSDSTFTRRLIK
PTRVPTQEPYDPNKVFSAANKDKISNEEESNAIEAADYPVEARTEDAIYDEPEIEDGFEDEDIDDKFEGGDGFDDEEDDD
GFDDEDSKDEFDDDDEFEDEDKLDGNKIEDRG

Sequences:

>Translated_672_residues
MSNGNHLRNILIGGVVSFSILEFCFYLSGILFYLFVDGPDGVDFRAINPSLTPFPQALWPTIFDHIQYCWHHPELYSFEL
KIKLVVSSVLPKIVLMIILWNVRERLIEWRPFKKKESLHGDSQWASEKDIRKAGLRSKKGLLLGKDKRGYFIADGFQHAL
LFAPTGSGKGVGFVIPNLLFWNDSVIVHDIKLENYEITSGWRERQGQKVYVWNPAQPDGVSHCYNPLEWISEKPGQMVDD
VQKIANLIMPEQDFWQNEARSLFVGVVLYLLAAPEKVKSFGEVVRTMRSDDVVYNLAVVLDTMGKIIHPVAYMNIAAFLQ
KADKERSGVVSTMNSSLELWANPLIDTATASSDFNILDFKKKKTTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRKLPSD
DEPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIVQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
QLIGNKTVQQESLNKPKFLDLNPASRSLHISETQRALLLPQEIIMLPRDDQIILIESTYPIKSKKILYYSDSTFTRRLIK
PTRVPTQEPYDPNKVFSAANKDKISNEEESNAIEAADYPVEARTEDAIYDEPEIEDGFEDEDIDDKFEGGDGFDDEEDDD
GFDDEDSKDEFDDDDEFEDEDKLDGNKIEDRG
>Mature_671_residues
SNGNHLRNILIGGVVSFSILEFCFYLSGILFYLFVDGPDGVDFRAINPSLTPFPQALWPTIFDHIQYCWHHPELYSFELK
IKLVVSSVLPKIVLMIILWNVRERLIEWRPFKKKESLHGDSQWASEKDIRKAGLRSKKGLLLGKDKRGYFIADGFQHALL
FAPTGSGKGVGFVIPNLLFWNDSVIVHDIKLENYEITSGWRERQGQKVYVWNPAQPDGVSHCYNPLEWISEKPGQMVDDV
QKIANLIMPEQDFWQNEARSLFVGVVLYLLAAPEKVKSFGEVVRTMRSDDVVYNLAVVLDTMGKIIHPVAYMNIAAFLQK
ADKERSGVVSTMNSSLELWANPLIDTATASSDFNILDFKKKKTTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRKLPSDD
EPYGVLFLMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIVQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLISQ
LIGNKTVQQESLNKPKFLDLNPASRSLHISETQRALLLPQEIIMLPRDDQIILIESTYPIKSKKILYYSDSTFTRRLIKP
TRVPTQEPYDPNKVFSAANKDKISNEEESNAIEAADYPVEARTEDAIYDEPEIEDGFEDEDIDDKFEGGDGFDDEEDDDG
FDDEDSKDEFDDDDEFEDEDKLDGNKIEDRG

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 76824; Mature: 76693

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNGNHLRNILIGGVVSFSILEFCFYLSGILFYLFVDGPDGVDFRAINPSLTPFPQALWP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCCCHHHHH
TIFDHIQYCWHHPELYSFELKIKLVVSSVLPKIVLMIILWNVRERLIEWRPFKKKESLHG
HHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC
DSQWASEKDIRKAGLRSKKGLLLGKDKRGYFIADGFQHALLFAPTGSGKGVGFVIPNLLF
CCHHCCHHHHHHHCCCCCCCCEEECCCCCEEEECCCCEEEEEEECCCCCCEEEEECCEEE
WNDSVIVHDIKLENYEITSGWRERQGQKVYVWNPAQPDGVSHCYNPLEWISEKPGQMVDD
ECCCEEEEEEEECCEEECCCHHHCCCCEEEEECCCCCCCHHHHCCHHHHHHCCCCHHHHH
VQKIANLIMPEQDFWQNEARSLFVGVVLYLLAAPEKVKSFGEVVRTMRSDDVVYNLAVVL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
DTMGKIIHPVAYMNIAAFLQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNILDFK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCCCCCCCCCCCCEEEEE
KKKTTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRKLPSDDEPYGVLFLMDEFPTLGKME
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHH
QFQTGIAYFRGYRVRLFLIVQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
HHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHCCHHHHCCCEEEEEEEECCCCHHHHHH
QLIGNKTVQQESLNKPKFLDLNPASRSLHISETQRALLLPQEIIMLPRDDQIILIESTYP
HHHCCCHHHHHHCCCCCEEECCCCCCEEEECHHHHHHHCCHHHEECCCCCCEEEEECCCC
IKSKKILYYSDSTFTRRLIKPTRVPTQEPYDPNKVFSAANKDKISNEEESNAIEAADYPV
CCCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHCCCCHHCCCEECCCCCC
EARTEDAIYDEPEIEDGFEDEDIDDKFEGGDGFDDEEDDDGFDDEDSKDEFDDDDEFEDE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DKLDGNKIEDRG
CCCCCCCCCCCC
>Mature Secondary Structure 
SNGNHLRNILIGGVVSFSILEFCFYLSGILFYLFVDGPDGVDFRAINPSLTPFPQALWP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCCCHHHHH
TIFDHIQYCWHHPELYSFELKIKLVVSSVLPKIVLMIILWNVRERLIEWRPFKKKESLHG
HHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC
DSQWASEKDIRKAGLRSKKGLLLGKDKRGYFIADGFQHALLFAPTGSGKGVGFVIPNLLF
CCHHCCHHHHHHHCCCCCCCCEEECCCCCEEEECCCCEEEEEEECCCCCCEEEEECCEEE
WNDSVIVHDIKLENYEITSGWRERQGQKVYVWNPAQPDGVSHCYNPLEWISEKPGQMVDD
ECCCEEEEEEEECCEEECCCHHHCCCCEEEEECCCCCCCHHHHCCHHHHHHCCCCHHHHH
VQKIANLIMPEQDFWQNEARSLFVGVVLYLLAAPEKVKSFGEVVRTMRSDDVVYNLAVVL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
DTMGKIIHPVAYMNIAAFLQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNILDFK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCCCCCCCCCCCCEEEEE
KKKTTVYVGLTPDNLTRLRPLMQVFYQQATEFLCRKLPSDDEPYGVLFLMDEFPTLGKME
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHH
QFQTGIAYFRGYRVRLFLIVQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLIS
HHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHCCHHHHCCCEEEEEEEECCCCHHHHHH
QLIGNKTVQQESLNKPKFLDLNPASRSLHISETQRALLLPQEIIMLPRDDQIILIESTYP
HHHCCCHHHHHHCCCCCEEECCCCCCEEEECHHHHHHHCCHHHEECCCCCCEEEEECCCC
IKSKKILYYSDSTFTRRLIKPTRVPTQEPYDPNKVFSAANKDKISNEEESNAIEAADYPV
CCCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHCCCCHHCCCEECCCCCC
EARTEDAIYDEPEIEDGFEDEDIDDKFEGGDGFDDEEDDDGFDDEDSKDEFDDDDEFEDE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DKLDGNKIEDRG
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3185501 [H]