Definition | Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome. |
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Accession | NC_010981 |
Length | 1,482,455 |
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The map label for this gene is yqgF [C]
Identifier: 190571530
GI number: 190571530
Start: 1232184
End: 1232651
Strand: Reverse
Name: yqgF [C]
Synonym: WPa_1150
Alternate gene names: 190571530
Gene position: 1232651-1232184 (Counterclockwise)
Preceding gene: 190571531
Following gene: 190571528
Centisome position: 83.15
GC content: 30.56
Gene sequence:
>468_bases ATGCTACATAGAAATCCAGATGAATTTCTAAAGTCTATTCCAAGAGATAAACGTATAATGTGCCTTGATATGGGAGAAAA ACAAATAGGCATAGCATTTAGTGATAAAACACAGCTTATAGCTACAGCTCATAGTATATATTATAGAAGAAATATGAGCA AAGATTTAGGTTATCTAAATAGAGTGCTTAAAGAAAATGAAGCTGGATCAATGGTAATAGGACTACCATTCACAATAGAT GAACAAGAGACCGAATGGTGCAAAGTAATAATCCAGTTTGCAAATAAAATAATAAAAAAATGCAAAGTACACATATACCT ACAAGACGAAAGTCTATCAACATCTCTTGCAACTCACGCACTAAAAATTACTGGAATATCAATCACAAAATCAAAAAAAA TAGATGATAAAATTGCTGCATGTATTATTCTGCAACGAACATTGGATAAGATAAATGCAATTAAATAG
Upstream 100 bases:
>100_bases AAAAACAGATATTAATTATGATGAATGTCTATCATGCCAGTAGACTGTACATAACTTACTGTCACAAAAATACAATTGTA CAAAAGTTATGTTTTCATAG
Downstream 100 bases:
>100_bases CTATTGGTTCCGTTTCTGTCATTTTTTTAGCTTAATTCACAACACTAACTATTAAACAAGAGAGAGATATATTAAGTTAT TATAATTATAAATGAGATAA
Product: putative holliday junction resolvase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 155; Mature: 155
Protein sequence:
>155_residues MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLNRVLKENEAGSMVIGLPFTID EQETEWCKVIIQFANKIIKKCKVHIYLQDESLSTSLATHALKITGISITKSKKIDDKIAACIILQRTLDKINAIK
Sequences:
>Translated_155_residues MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLNRVLKENEAGSMVIGLPFTID EQETEWCKVIIQFANKIIKKCKVHIYLQDESLSTSLATHALKITGISITKSKKIDDKIAACIILQRTLDKINAIK >Mature_155_residues MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLNRVLKENEAGSMVIGLPFTID EQETEWCKVIIQFANKIIKKCKVHIYLQDESLSTSLATHALKITGISITKSKKIDDKIAACIILQRTLDKINAIK
Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]
COG id: COG0816
COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yqgF HJR family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005227 - InterPro: IPR006641 - InterPro: IPR012337 [H]
Pfam domain/function: PF03652 UPF0081 [H]
EC number: NA
Molecular weight: Translated: 17696; Mature: 17696
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLN CCCCCHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHH RVLKENEAGSMVIGLPFTIDEQETEWCKVIIQFANKIIKKCKVHIYLQDESLSTSLATHA HHHHCCCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHE LKITGISITKSKKIDDKIAACIILQRTLDKINAIK EEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLN CCCCCHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHH RVLKENEAGSMVIGLPFTIDEQETEWCKVIIQFANKIIKKCKVHIYLQDESLSTSLATHA HHHHCCCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHE LKITGISITKSKKIDDKIAACIILQRTLDKINAIK EEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA