Definition Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome.
Accession NC_010981
Length 1,482,455

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The map label for this gene is yqgF [C]

Identifier: 190571530

GI number: 190571530

Start: 1232184

End: 1232651

Strand: Reverse

Name: yqgF [C]

Synonym: WPa_1150

Alternate gene names: 190571530

Gene position: 1232651-1232184 (Counterclockwise)

Preceding gene: 190571531

Following gene: 190571528

Centisome position: 83.15

GC content: 30.56

Gene sequence:

>468_bases
ATGCTACATAGAAATCCAGATGAATTTCTAAAGTCTATTCCAAGAGATAAACGTATAATGTGCCTTGATATGGGAGAAAA
ACAAATAGGCATAGCATTTAGTGATAAAACACAGCTTATAGCTACAGCTCATAGTATATATTATAGAAGAAATATGAGCA
AAGATTTAGGTTATCTAAATAGAGTGCTTAAAGAAAATGAAGCTGGATCAATGGTAATAGGACTACCATTCACAATAGAT
GAACAAGAGACCGAATGGTGCAAAGTAATAATCCAGTTTGCAAATAAAATAATAAAAAAATGCAAAGTACACATATACCT
ACAAGACGAAAGTCTATCAACATCTCTTGCAACTCACGCACTAAAAATTACTGGAATATCAATCACAAAATCAAAAAAAA
TAGATGATAAAATTGCTGCATGTATTATTCTGCAACGAACATTGGATAAGATAAATGCAATTAAATAG

Upstream 100 bases:

>100_bases
AAAAACAGATATTAATTATGATGAATGTCTATCATGCCAGTAGACTGTACATAACTTACTGTCACAAAAATACAATTGTA
CAAAAGTTATGTTTTCATAG

Downstream 100 bases:

>100_bases
CTATTGGTTCCGTTTCTGTCATTTTTTTAGCTTAATTCACAACACTAACTATTAAACAAGAGAGAGATATATTAAGTTAT
TATAATTATAAATGAGATAA

Product: putative holliday junction resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLNRVLKENEAGSMVIGLPFTID
EQETEWCKVIIQFANKIIKKCKVHIYLQDESLSTSLATHALKITGISITKSKKIDDKIAACIILQRTLDKINAIK

Sequences:

>Translated_155_residues
MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLNRVLKENEAGSMVIGLPFTID
EQETEWCKVIIQFANKIIKKCKVHIYLQDESLSTSLATHALKITGISITKSKKIDDKIAACIILQRTLDKINAIK
>Mature_155_residues
MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLNRVLKENEAGSMVIGLPFTID
EQETEWCKVIIQFANKIIKKCKVHIYLQDESLSTSLATHALKITGISITKSKKIDDKIAACIILQRTLDKINAIK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 17696; Mature: 17696

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLN
CCCCCHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHH
RVLKENEAGSMVIGLPFTIDEQETEWCKVIIQFANKIIKKCKVHIYLQDESLSTSLATHA
HHHHCCCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHE
LKITGISITKSKKIDDKIAACIILQRTLDKINAIK
EEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLHRNPDEFLKSIPRDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYYRRNMSKDLGYLN
CCCCCHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHH
RVLKENEAGSMVIGLPFTIDEQETEWCKVIIQFANKIIKKCKVHIYLQDESLSTSLATHA
HHHHCCCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHE
LKITGISITKSKKIDDKIAACIILQRTLDKINAIK
EEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA