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The map label for this gene is rodA [H]

Identifier: 190571408

GI number: 190571408

Start: 1083736

End: 1084839

Strand: Reverse

Name: rodA [H]

Synonym: WPa_1016

Alternate gene names: 190571408

Gene position: 1084839-1083736 (Counterclockwise)

Preceding gene: 190571409

Following gene: 190571400

Centisome position: 73.18

GC content: 35.24

Gene sequence:

>1104_bases
GTGGATAAGCTGAAGAAGATTCACTTATTATTAGTCATTAACGTAATAGCTCTGTTTTGCGTTGGCATTGTTGTGCAATA
TTCTTCTGCTGGAGGAAAGTGGGCTCCATTTGCAATTCACCAATTGGTCATATTCTCTTTCTTCTTTTTGCTTGCTATAG
CTATGTCATTTATAGAGCTAGATTTTTATTTGAAGCACGCTTATTTTTTTTACATAGCAGCAGTAATTGCGCTGTTAGCA
GTAAATTTTTTTGGCTCGCATATAATGGGTGCAACGAGATGGATAAGAATTGGGTCAATTAGTTTACAACCATCAGAATT
TGTAAAAGTGGGCTTAATACTTGCACTTGCTCGTTATTTTAATAAACAAAGTGTGTATAAAATGATGAAATTTCAAAGTT
TATTTAAGCCACTTATAATTATTTTCTTACCTGTATTCCTTGTATTGAAGCAACCTAATTTAGGAACAGCTGTAATAATA
TTGTTTATAGGAGCATCAATTATATTCACAGCAATAATGGAAAGACCTCATTTAATAATTTTTGGAGCGCTTGGCATTTT
CGCAATACCAGCTATTTGGCCTTTTTTGCGCCCTTATCACAAGCAAAGGATATTATCATTTTTGGATTCATCAGTAGATC
CACTTGGAATAGGTTATAATGCACAGCAATCTCAAATAGCTATTGGTTCAGGAGGTTTATTTGGTAAGGGATTTGTTAAT
GGGAGTCAAACTCAACTTGGATTTTTGCCAGAGAAACGCACAGATTTTGCTTTTGCGGTACTGAGTGAGGAATGGGGTTT
TTTAGGCAGCATAACTTTGATTTTACTCTATACCACATTCCTCGCTATAATATTCTCTATCGCTTACAGGTCAAAAAATT
ATTTTTCTAAGTTAATATCTATCGGGGTTTTCGCCTTTTTTGGTGCTCATTTCTTTATAAACATTGGAATGACAATAGGC
CTTTTACCTATAATAGGTGACCCACTTCCATTTCTATCCTATGGCGGAAGCACAACTGCTGCGAGCTTAATATGTATAGG
ATTGCTACTTAGTTCCGTGGCATCTACAAAGAACTTAAAGCTAAGTTTCCGATTTCACCCATAG

Upstream 100 bases:

>100_bases
AACTGGGATATATAGTAGTCCAATTCGGTTGGTAATTAATAAATTTGCTTTTTGATTTTCTTATGTTTTATTGTATCTCA
AAGTCTGTAAAGTTTTTGCT

Downstream 100 bases:

>100_bases
AAAGAGCTTAGACAACCATCACTCTGCTAATGGTTAACGTCTTATTCTTCAATGAGAATCCCATTTTACGGTGCTTAAAT
CTATTCCCTCTTGTACCATT

Product: rod shape-determining protein RodA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MDKLKKIHLLLVINVIALFCVGIVVQYSSAGGKWAPFAIHQLVIFSFFFLLAIAMSFIELDFYLKHAYFFYIAAVIALLA
VNFFGSHIMGATRWIRIGSISLQPSEFVKVGLILALARYFNKQSVYKMMKFQSLFKPLIIIFLPVFLVLKQPNLGTAVII
LFIGASIIFTAIMERPHLIIFGALGIFAIPAIWPFLRPYHKQRILSFLDSSVDPLGIGYNAQQSQIAIGSGGLFGKGFVN
GSQTQLGFLPEKRTDFAFAVLSEEWGFLGSITLILLYTTFLAIIFSIAYRSKNYFSKLISIGVFAFFGAHFFINIGMTIG
LLPIIGDPLPFLSYGGSTTAASLICIGLLLSSVASTKNLKLSFRFHP

Sequences:

>Translated_367_residues
MDKLKKIHLLLVINVIALFCVGIVVQYSSAGGKWAPFAIHQLVIFSFFFLLAIAMSFIELDFYLKHAYFFYIAAVIALLA
VNFFGSHIMGATRWIRIGSISLQPSEFVKVGLILALARYFNKQSVYKMMKFQSLFKPLIIIFLPVFLVLKQPNLGTAVII
LFIGASIIFTAIMERPHLIIFGALGIFAIPAIWPFLRPYHKQRILSFLDSSVDPLGIGYNAQQSQIAIGSGGLFGKGFVN
GSQTQLGFLPEKRTDFAFAVLSEEWGFLGSITLILLYTTFLAIIFSIAYRSKNYFSKLISIGVFAFFGAHFFINIGMTIG
LLPIIGDPLPFLSYGGSTTAASLICIGLLLSSVASTKNLKLSFRFHP
>Mature_367_residues
MDKLKKIHLLLVINVIALFCVGIVVQYSSAGGKWAPFAIHQLVIFSFFFLLAIAMSFIELDFYLKHAYFFYIAAVIALLA
VNFFGSHIMGATRWIRIGSISLQPSEFVKVGLILALARYFNKQSVYKMMKFQSLFKPLIIIFLPVFLVLKQPNLGTAVII
LFIGASIIFTAIMERPHLIIFGALGIFAIPAIWPFLRPYHKQRILSFLDSSVDPLGIGYNAQQSQIAIGSGGLFGKGFVN
GSQTQLGFLPEKRTDFAFAVLSEEWGFLGSITLILLYTTFLAIIFSIAYRSKNYFSKLISIGVFAFFGAHFFINIGMTIG
LLPIIGDPLPFLSYGGSTTAASLICIGLLLSSVASTKNLKLSFRFHP

Specific function: This is one of the proteins responsible for the rod shape of the cell. It is required for the expression of the enzymatic activity of PBP2, which is thought to synthesize peptidoglycan in the step of initiation of cell elongation [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=315, Percent_Identity=37.7777777777778, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI1786277, Length=305, Percent_Identity=31.4754098360656, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 40664; Mature: 40664

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLKKIHLLLVINVIALFCVGIVVQYSSAGGKWAPFAIHQLVIFSFFFLLAIAMSFIEL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DFYLKHAYFFYIAAVIALLAVNFFGSHIMGATRWIRIGSISLQPSEFVKVGLILALARYF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECEECCHHHHHHHHHHHHHHHHH
NKQSVYKMMKFQSLFKPLIIIFLPVFLVLKQPNLGTAVIILFIGASIIFTAIMERPHLII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
FGALGIFAIPAIWPFLRPYHKQRILSFLDSSVDPLGIGYNAQQSQIAIGSGGLFGKGFVN
EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
GSQTQLGFLPEKRTDFAFAVLSEEWGFLGSITLILLYTTFLAIIFSIAYRSKNYFSKLIS
CCCCEECCCCCCCCCHHHEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGVFAFFGAHFFINIGMTIGLLPIIGDPLPFLSYGGSTTAASLICIGLLLSSVASTKNLK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
LSFRFHP
EEEEECC
>Mature Secondary Structure
MDKLKKIHLLLVINVIALFCVGIVVQYSSAGGKWAPFAIHQLVIFSFFFLLAIAMSFIEL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DFYLKHAYFFYIAAVIALLAVNFFGSHIMGATRWIRIGSISLQPSEFVKVGLILALARYF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECEECCHHHHHHHHHHHHHHHHH
NKQSVYKMMKFQSLFKPLIIIFLPVFLVLKQPNLGTAVIILFIGASIIFTAIMERPHLII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
FGALGIFAIPAIWPFLRPYHKQRILSFLDSSVDPLGIGYNAQQSQIAIGSGGLFGKGFVN
EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
GSQTQLGFLPEKRTDFAFAVLSEEWGFLGSITLILLYTTFLAIIFSIAYRSKNYFSKLIS
CCCCEECCCCCCCCCHHHEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGVFAFFGAHFFINIGMTIGLLPIIGDPLPFLSYGGSTTAASLICIGLLLSSVASTKNLK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
LSFRFHP
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]