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The map label for this gene is cycM [H]

Identifier: 190571381

GI number: 190571381

Start: 1056874

End: 1057398

Strand: Direct

Name: cycM [H]

Synonym: WPa_0989

Alternate gene names: 190571381

Gene position: 1056874-1057398 (Clockwise)

Preceding gene: 190571375

Following gene: 190571382

Centisome position: 71.29

GC content: 38.48

Gene sequence:

>525_bases
ATGGAGCTTAATAAGATTGCAGCATCGATTTTACTTTCTGGATTAATAATTATGATAGTTAGTAATGTAGTTGATATGCT
CTACAACCCAGAGGATTATAAAATTGAACACCAAACAATAGTAGCAGCCAGCAATGAGCCTCAACAAAAGATTGAACAAG
TGGCACTTGATATTGGAGAGCTCATGCAGAATGCTAGCTTTGAAAAAGGCAAGTCAGCAGCAAAAAAATGTATAGCTTGT
CATAGTTTTGAGAAAGGTGGAATGAATAAAGTGGGGCCAAACTTATGGAACGTGGTTGGAAATAAAAAGGCCCATCTTGG
CAGCTCATTCAATTACTCAAAAGCACTACTTGAAAAAGGTGGGAAATGGGAGTATGAGGAGTTATTTGCTTTTTTAAAAA
ATCCAAAAGCCTACATAAAAGGTACACGTATGGCATTTGCAGGCATTTCCAATCCACAAGAGATTGCAGATCTAGTCAGC
TATTTGCGTTCGATGAGCGATAGTCCGGTTGCCTTGCCAAAGTAG

Upstream 100 bases:

>100_bases
AGTAATAGAAATTTCTATCTTTGGTGAAATAAAGGTAATTGTTTACTGTTTGCGAAAATATTTGCATAATTTAAGTAACA
TTACTTGATAAGAATTAACT

Downstream 100 bases:

>100_bases
TATGAATTATTGTAAATTACTCGATGGAAGTAATGGCCATATAGCATATCGAAAGCTACAAGGAAAGAAGGCTTCTATAG
TTTTTTTTAGTGGTTTTGCA

Product: cytochrome c family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MELNKIAASILLSGLIIMIVSNVVDMLYNPEDYKIEHQTIVAASNEPQQKIEQVALDIGELMQNASFEKGKSAAKKCIAC
HSFEKGGMNKVGPNLWNVVGNKKAHLGSSFNYSKALLEKGGKWEYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLVS
YLRSMSDSPVALPK

Sequences:

>Translated_174_residues
MELNKIAASILLSGLIIMIVSNVVDMLYNPEDYKIEHQTIVAASNEPQQKIEQVALDIGELMQNASFEKGKSAAKKCIAC
HSFEKGGMNKVGPNLWNVVGNKKAHLGSSFNYSKALLEKGGKWEYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLVS
YLRSMSDSPVALPK
>Mature_174_residues
MELNKIAASILLSGLIIMIVSNVVDMLYNPEDYKIEHQTIVAASNEPQQKIEQVALDIGELMQNASFEKGKSAAKKCIAC
HSFEKGGMNKVGPNLWNVVGNKKAHLGSSFNYSKALLEKGGKWEYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLVS
YLRSMSDSPVALPK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=104, Percent_Identity=41.3461538461538, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17539604, Length=99, Percent_Identity=42.4242424242424, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17566554, Length=96, Percent_Identity=39.5833333333333, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6320796, Length=87, Percent_Identity=40.2298850574713, Blast_Score=81, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6322508, Length=106, Percent_Identity=37.7358490566038, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI17137228, Length=100, Percent_Identity=45, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI17137204, Length=104, Percent_Identity=43.2692307692308, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 19154; Mature: 19154

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNKIAASILLSGLIIMIVSNVVDMLYNPEDYKIEHQTIVAASNEPQQKIEQVALDIGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCCHHHHHHHHHHHHHH
LMQNASFEKGKSAAKKCIACHSFEKGGMNKVGPNLWNVVGNKKAHLGSSFNYSKALLEKG
HHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHCCCCCCHHHHHHHCC
GKWEYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLVSYLRSMSDSPVALPK
CCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MELNKIAASILLSGLIIMIVSNVVDMLYNPEDYKIEHQTIVAASNEPQQKIEQVALDIGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCCHHHHHHHHHHHHHH
LMQNASFEKGKSAAKKCIACHSFEKGGMNKVGPNLWNVVGNKKAHLGSSFNYSKALLEKG
HHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHCCCCCCHHHHHHHCC
GKWEYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLVSYLRSMSDSPVALPK
CCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]