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The map label for this gene is sodB [H]

Identifier: 190571001

GI number: 190571001

Start: 638942

End: 639550

Strand: Reverse

Name: sodB [H]

Synonym: WPa_0592

Alternate gene names: 190571001

Gene position: 639550-638942 (Counterclockwise)

Preceding gene: 190571005

Following gene: 190571000

Centisome position: 43.14

GC content: 32.18

Gene sequence:

>609_bases
ATGAGTTTTACTTTACCTGAGTTGCCATATGATAAAGCAGCTTTAGAACCTTACATATCTGCAAATACATTGAATTTTCA
TTATGATAAGCACCATAAGGGATATTTAAATAAACTCAACGAACTGGTTGAAAACACAGATTATCAACATATGGAAATTG
AGGAATTAGTAACGAAAGTTCATGGAAATAATAATACAGTTCCTATTTTTAACAATGTAGCACAAGTTTGGAATCACACT
TTTTATTGGAATTCAATGAAAAAAAATGGTGGTGGTAAACCTAAAGATGATGGTCTTCTAGCAAAAAAAATTCAAGATGA
TATTGGTGGCTTTGACAAATTTTGTGAAGAATTTTCAAATTATGGAGTAAGCCAATTTGGTAGTGGATGGGTGTGGTTAG
TGCTTGAAAAAGGAAAACTCAAAATCACTAAAACTCCAAATGCGGATCTACCGCTAATTTATGGCCAGGTGCCACTACTT
ACTATGGATGTATGGGAGCATGCATACTATTTGGATTGCCAAAATCGCAGAATTGACTACATAAAAGTTTTTCTTGATCA
TTTGATCAATTGGGATTTTGTAGAAGAGAATTTAAAGAAGAATATATAA

Upstream 100 bases:

>100_bases
TCAGTATAGTTCATTTTAGAATAACTGCAATAAACATCTTACAAATTATGTGTTGCGCAAAAGCACATATTAACATACCA
TCGAAAATAAAGAGGTCAGC

Downstream 100 bases:

>100_bases
GATGAATATACCACAAGTAACAAAACTAGATAATGGTCTGCGCATAATAACTGAGCGAGTGCATGAAGTTGATTCCGTAG
CTTTAAATATACGAGTTGGT

Product: superoxide dismutase, Fe

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MSFTLPELPYDKAALEPYISANTLNFHYDKHHKGYLNKLNELVENTDYQHMEIEELVTKVHGNNNTVPIFNNVAQVWNHT
FYWNSMKKNGGGKPKDDGLLAKKIQDDIGGFDKFCEEFSNYGVSQFGSGWVWLVLEKGKLKITKTPNADLPLIYGQVPLL
TMDVWEHAYYLDCQNRRIDYIKVFLDHLINWDFVEENLKKNI

Sequences:

>Translated_202_residues
MSFTLPELPYDKAALEPYISANTLNFHYDKHHKGYLNKLNELVENTDYQHMEIEELVTKVHGNNNTVPIFNNVAQVWNHT
FYWNSMKKNGGGKPKDDGLLAKKIQDDIGGFDKFCEEFSNYGVSQFGSGWVWLVLEKGKLKITKTPNADLPLIYGQVPLL
TMDVWEHAYYLDCQNRRIDYIKVFLDHLINWDFVEENLKKNI
>Mature_201_residues
SFTLPELPYDKAALEPYISANTLNFHYDKHHKGYLNKLNELVENTDYQHMEIEELVTKVHGNNNTVPIFNNVAQVWNHTF
YWNSMKKNGGGKPKDDGLLAKKIQDDIGGFDKFCEEFSNYGVSQFGSGWVWLVLEKGKLKITKTPNADLPLIYGQVPLLT
MDVWEHAYYLDCQNRRIDYIKVFLDHLINWDFVEENLKKNI

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=197, Percent_Identity=42.6395939086294, Blast_Score=141, Evalue=5e-34,
Organism=Homo sapiens, GI67782305, Length=197, Percent_Identity=42.6395939086294, Blast_Score=141, Evalue=5e-34,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=37.0558375634518, Blast_Score=109, Evalue=2e-24,
Organism=Escherichia coli, GI1787946, Length=201, Percent_Identity=47.2636815920398, Blast_Score=193, Evalue=7e-51,
Organism=Escherichia coli, GI1790342, Length=202, Percent_Identity=41.0891089108911, Blast_Score=151, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=206, Percent_Identity=38.3495145631068, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17569479, Length=203, Percent_Identity=37.4384236453202, Blast_Score=110, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6321796, Length=203, Percent_Identity=35.9605911330049, Blast_Score=108, Evalue=5e-25,
Organism=Drosophila melanogaster, GI17136812, Length=196, Percent_Identity=38.265306122449, Blast_Score=116, Evalue=1e-26,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23563; Mature: 23432

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTLPELPYDKAALEPYISANTLNFHYDKHHKGYLNKLNELVENTDYQHMEIEELVTKV
CCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
HGNNNTVPIFNNVAQVWNHTFYWNSMKKNGGGKPKDDGLLAKKIQDDIGGFDKFCEEFSN
CCCCCCEEHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHC
YGVSQFGSGWVWLVLEKGKLKITKTPNADLPLIYGQVPLLTMDVWEHAYYLDCQNRRIDY
CCHHHCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEHHHHHCEEEEECCCCCHHH
IKVFLDHLINWDFVEENLKKNI
HHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure 
SFTLPELPYDKAALEPYISANTLNFHYDKHHKGYLNKLNELVENTDYQHMEIEELVTKV
CCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
HGNNNTVPIFNNVAQVWNHTFYWNSMKKNGGGKPKDDGLLAKKIQDDIGGFDKFCEEFSN
CCCCCCEEHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHC
YGVSQFGSGWVWLVLEKGKLKITKTPNADLPLIYGQVPLLTMDVWEHAYYLDCQNRRIDY
CCHHHCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEHHHHHCEEEEECCCCCHHH
IKVFLDHLINWDFVEENLKKNI
HHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]