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The map label for this gene is ykfC [H]

Identifier: 190570727

GI number: 190570727

Start: 284961

End: 286304

Strand: Reverse

Name: ykfC [H]

Synonym: WPa_0280

Alternate gene names: 190570727

Gene position: 286304-284961 (Counterclockwise)

Preceding gene: 190570733

Following gene: 190570726

Centisome position: 19.31

GC content: 39.66

Gene sequence:

>1344_bases
ATGACAAAAATGCCGATAAAATTACAAGACCTGAGAAGAAAGATATACACCAAAGCGAAGGCAGAACCGGAATGGCGATT
CTGGGGAATCCATGTTCATGTCTGTAAAATGGAGACACTGGAGGAAGCTTACAAACTAACGAAGAGGAGTAATGGGGCAC
CAGGGATTGATGGGGTGACATTCGAATCGATAGAGACAGAGGGCTCAAGAAAGTATCTTCAACGAATAAGACACGAATTA
ATAACCAAGACCTATAGCCCAAATAGGAACCGGAGAAAGGAAATACCAAAATCTGGAGAAAAATTCAGAACGTTGAACAT
ACCCTGCATCCGGGATAGAATAGTGCAAACAGCACTGAAGCTAATACTTGAACCGATATTCGAATCAGACTTCCAAAAAG
GATCATACGGGTATAGACCTAAGCGTAATGCGCATGAAGCAGTACAAAAAGTAACGGAAGCAGCAATCAAAGGCAATACA
AAAGTAATTGACGTAGATCTAAAATCCTACTTTGACAGTGTGCGACATCATATTCTGATGGAAAAGATTGCCAAAAGAAT
AAATGACAAAGAAATCATGCGCATGATTAAGCTAATCCTCAAAATAGGAGGAAAACGAGGAATGGCACAAGGATCACCAC
TTTCACCACTACTAAGCAATATATACCTAAATGAGGTAGATAAAATGTTGGAGAAAGCAAAAGAGGTGACCAAAGAAGGA
AAGTACCAACGTATGGAATATGCCAGATGGGCAGATGATTTGGTGATACTGATCAGAGAATACCCGAAACGGGAATGGCT
AGAAAGAGCAGTATACAGAAGGTTGGAAGAAGAATTAGCAAAACTAGAAGTGAGAGTAAATGAAGAAAAGACAAAAGTCA
TTAACCTAAAGAAAGGAGAAACATTTAGCTTCCTAGGGTTTGATTTTCAAGAGAATATCACAAAACAAGGAAAGTGGAAT
GTCAGGAAAACACCGCAGATGAAAGCACGAACAAACCTGCTACGCAAGTTGAAGGAAATATTTCGGCGCCATAAATCGCA
ACCGATAAAAAGAGTGATAAATGACATCAATCCGATATTGAGAGGGTGGGTAAACTACTTTAGGATAGGAAACTCTAGTC
GAAAGTTCAGTTACGTAAAACACTGGGTGGAAAAGAAGGTAAGACGCAATTTAATGCGAGCCAGGAAAGCAAAGAAAGGG
TTTGGTTGGAAGAAATGGAGTAGCGAATGGATATACAAAACGCTGGGTCTATATTCAGACTACAGAATAAGGTATTACAG
ACCGAAAGCATCACCAACACAATATGTGATAAACTTTGGTAAAGAACTTGCTAGGAAAGCGTAG

Upstream 100 bases:

>100_bases
GACGGATGGGTGCGTAGTAGTGAAGAAGTGAGGTAACGCTCATGGAGCAAAGGCACCCTACTAGCAGGGATCTTTTAACA
AAAGGAAGGTAAAGGTAAAA

Downstream 100 bases:

>100_bases
TGCGGGAAAACCGCATGCTGCGTTTGACGAGGCGGGAGCTGGAAACGTTAACATGGGAATTTGGATTGAGGCCCAGGATG
AAAATAATGGATCAGCCACC

Product: putative reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MTKMPIKLQDLRRKIYTKAKAEPEWRFWGIHVHVCKMETLEEAYKLTKRSNGAPGIDGVTFESIETEGSRKYLQRIRHEL
ITKTYSPNRNRRKEIPKSGEKFRTLNIPCIRDRIVQTALKLILEPIFESDFQKGSYGYRPKRNAHEAVQKVTEAAIKGNT
KVIDVDLKSYFDSVRHHILMEKIAKRINDKEIMRMIKLILKIGGKRGMAQGSPLSPLLSNIYLNEVDKMLEKAKEVTKEG
KYQRMEYARWADDLVILIREYPKREWLERAVYRRLEEELAKLEVRVNEEKTKVINLKKGETFSFLGFDFQENITKQGKWN
VRKTPQMKARTNLLRKLKEIFRRHKSQPIKRVINDINPILRGWVNYFRIGNSSRKFSYVKHWVEKKVRRNLMRARKAKKG
FGWKKWSSEWIYKTLGLYSDYRIRYYRPKASPTQYVINFGKELARKA

Sequences:

>Translated_447_residues
MTKMPIKLQDLRRKIYTKAKAEPEWRFWGIHVHVCKMETLEEAYKLTKRSNGAPGIDGVTFESIETEGSRKYLQRIRHEL
ITKTYSPNRNRRKEIPKSGEKFRTLNIPCIRDRIVQTALKLILEPIFESDFQKGSYGYRPKRNAHEAVQKVTEAAIKGNT
KVIDVDLKSYFDSVRHHILMEKIAKRINDKEIMRMIKLILKIGGKRGMAQGSPLSPLLSNIYLNEVDKMLEKAKEVTKEG
KYQRMEYARWADDLVILIREYPKREWLERAVYRRLEEELAKLEVRVNEEKTKVINLKKGETFSFLGFDFQENITKQGKWN
VRKTPQMKARTNLLRKLKEIFRRHKSQPIKRVINDINPILRGWVNYFRIGNSSRKFSYVKHWVEKKVRRNLMRARKAKKG
FGWKKWSSEWIYKTLGLYSDYRIRYYRPKASPTQYVINFGKELARKA
>Mature_446_residues
TKMPIKLQDLRRKIYTKAKAEPEWRFWGIHVHVCKMETLEEAYKLTKRSNGAPGIDGVTFESIETEGSRKYLQRIRHELI
TKTYSPNRNRRKEIPKSGEKFRTLNIPCIRDRIVQTALKLILEPIFESDFQKGSYGYRPKRNAHEAVQKVTEAAIKGNTK
VIDVDLKSYFDSVRHHILMEKIAKRINDKEIMRMIKLILKIGGKRGMAQGSPLSPLLSNIYLNEVDKMLEKAKEVTKEGK
YQRMEYARWADDLVILIREYPKREWLERAVYRRLEEELAKLEVRVNEEKTKVINLKKGETFSFLGFDFQENITKQGKWNV
RKTPQMKARTNLLRKLKEIFRRHKSQPIKRVINDINPILRGWVNYFRIGNSSRKFSYVKHWVEKKVRRNLMRARKAKKGF
GWKKWSSEWIYKTLGLYSDYRIRYYRPKASPTQYVINFGKELARKA

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=385, Percent_Identity=24.1558441558442, Blast_Score=107, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6226520, Length=374, Percent_Identity=25.9358288770053, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 53208; Mature: 53077

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKMPIKLQDLRRKIYTKAKAEPEWRFWGIHVHVCKMETLEEAYKLTKRSNGAPGIDGVT
CCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCC
FESIETEGSRKYLQRIRHELITKTYSPNRNRRKEIPKSGEKFRTLNIPCIRDRIVQTALK
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEECCHHHHHHHHHHHHH
LILEPIFESDFQKGSYGYRPKRNAHEAVQKVTEAAIKGNTKVIDVDLKSYFDSVRHHILM
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHH
EKIAKRINDKEIMRMIKLILKIGGKRGMAQGSPLSPLLSNIYLNEVDKMLEKAKEVTKEG
HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
KYQRMEYARWADDLVILIREYPKREWLERAVYRRLEEELAKLEVRVNEEKTKVINLKKGE
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCC
TFSFLGFDFQENITKQGKWNVRKTPQMKARTNLLRKLKEIFRRHKSQPIKRVINDINPIL
EEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RGWVNYFRIGNSSRKFSYVKHWVEKKVRRNLMRARKAKKGFGWKKWSSEWIYKTLGLYSD
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
YRIRYYRPKASPTQYVINFGKELARKA
CEEEEECCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKMPIKLQDLRRKIYTKAKAEPEWRFWGIHVHVCKMETLEEAYKLTKRSNGAPGIDGVT
CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCC
FESIETEGSRKYLQRIRHELITKTYSPNRNRRKEIPKSGEKFRTLNIPCIRDRIVQTALK
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEECCHHHHHHHHHHHHH
LILEPIFESDFQKGSYGYRPKRNAHEAVQKVTEAAIKGNTKVIDVDLKSYFDSVRHHILM
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHH
EKIAKRINDKEIMRMIKLILKIGGKRGMAQGSPLSPLLSNIYLNEVDKMLEKAKEVTKEG
HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
KYQRMEYARWADDLVILIREYPKREWLERAVYRRLEEELAKLEVRVNEEKTKVINLKKGE
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCC
TFSFLGFDFQENITKQGKWNVRKTPQMKARTNLLRKLKEIFRRHKSQPIKRVINDINPIL
EEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RGWVNYFRIGNSSRKFSYVKHWVEKKVRRNLMRARKAKKGFGWKKWSSEWIYKTLGLYSD
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
YRIRYYRPKASPTQYVINFGKELARKA
CEEEEECCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]