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The map label for this gene is recO

Identifier: 189499187

GI number: 189499187

Start: 199271

End: 200056

Strand: Reverse

Name: recO

Synonym: Cphamn1_0203

Alternate gene names: 189499187

Gene position: 200056-199271 (Counterclockwise)

Preceding gene: 189499189

Following gene: 189499186

Centisome position: 7.31

GC content: 50.76

Gene sequence:

>786_bases
GTGCTTACAAAAACCCGGGCTGTAGTTCTTAAAGAGGTTAAATTCAGGGAGCAGTCCAAAATATGCTCGCTCTATACCCG
GGACTTCGGACGGATCTCTGTCATACTCAAAGGGGGACGAAACCTGAAAAGCAGGCTTTCCGGGTTGTTCTGCACCGGGA
GTCTCCTCGAAGTTGTTCTCTACAACAGAAGCAACAGAGACTTGCAGCTGGTGAGCGAAGCCCGTATCATCAGAAGTCCG
ATGACCGCGGAGCCAAGCATGGAAAGGTTCAGCGCGATTTACCGGCTAATAGAAATCTTAAAAATCTCGACCGGCAACGA
GGAAAAAAATATCCGTCTTTTCAATGCGCTTGAGCGAACCCTTGAAAAACTGTGCGCTCCCTGCCGTAACGCAGACGCAG
CTGTTGCATGGTTTATGCTGAAACTGATCTCGGAATCAGGTTTCGAACCATCCATCGAGCAGTGCGTCACCACCGGTAAA
TCCATCCTGCCGATGCTTCAGGAAGGATCGGCGGACGACCTCTGCCTTACCTACGATCCAGGCGGCGTCTCACTGCCCGT
ACCTGCCGCTCAAAAAGGACCGCCGGGGCAGCGCCTTCCCGTTCAGGTCTATCTGCTCATGAGAACACTCAACAGGCTGG
ATATCCGCTCGATCGACGAGATCGATATACCGGCTGACAATAGCAGACTGCTCTGTGATATCCTGCAGAATTATTGTTCA
CTGCACAACAACTATAACCCCTCTTCAAAAAACCGCAGAATCATTTCCCGGATTCTCTATGAATAA

Upstream 100 bases:

>100_bases
TATTTTTATATGTATTCAGTCGTCAAGGTCAATTGCCCGGACCTGAATAAATCTGGCTGACCTATATATAATTATTTTCC
AACATAAAAAAATCCGCCTT

Downstream 100 bases:

>100_bases
ACACCGCAAAAGGAGCCCGTAATGCAACACGGAAATCCGGCTTTTTGAAGAATGCGCCATTACTGAACCCTTGTACTCGC
CATATCTGTTTTATATCTTC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MLTKTRAVVLKEVKFREQSKICSLYTRDFGRISVILKGGRNLKSRLSGLFCTGSLLEVVLYNRSNRDLQLVSEARIIRSP
MTAEPSMERFSAIYRLIEILKISTGNEEKNIRLFNALERTLEKLCAPCRNADAAVAWFMLKLISESGFEPSIEQCVTTGK
SILPMLQEGSADDLCLTYDPGGVSLPVPAAQKGPPGQRLPVQVYLLMRTLNRLDIRSIDEIDIPADNSRLLCDILQNYCS
LHNNYNPSSKNRRIISRILYE

Sequences:

>Translated_261_residues
MLTKTRAVVLKEVKFREQSKICSLYTRDFGRISVILKGGRNLKSRLSGLFCTGSLLEVVLYNRSNRDLQLVSEARIIRSP
MTAEPSMERFSAIYRLIEILKISTGNEEKNIRLFNALERTLEKLCAPCRNADAAVAWFMLKLISESGFEPSIEQCVTTGK
SILPMLQEGSADDLCLTYDPGGVSLPVPAAQKGPPGQRLPVQVYLLMRTLNRLDIRSIDEIDIPADNSRLLCDILQNYCS
LHNNYNPSSKNRRIISRILYE
>Mature_261_residues
MLTKTRAVVLKEVKFREQSKICSLYTRDFGRISVILKGGRNLKSRLSGLFCTGSLLEVVLYNRSNRDLQLVSEARIIRSP
MTAEPSMERFSAIYRLIEILKISTGNEEKNIRLFNALERTLEKLCAPCRNADAAVAWFMLKLISESGFEPSIEQCVTTGK
SILPMLQEGSADDLCLTYDPGGVSLPVPAAQKGPPGQRLPVQVYLLMRTLNRLDIRSIDEIDIPADNSRLLCDILQNYCS
LHNNYNPSSKNRRIISRILYE

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_CHLPB (B3EKJ8)

Other databases:

- EMBL:   CP001101
- RefSeq:   YP_001958657.1
- ProteinModelPortal:   B3EKJ8
- GeneID:   6373858
- GenomeReviews:   CP001101_GR
- KEGG:   cpb:Cphamn1_0203
- HOGENOM:   HBG405049
- OMA:   RDQSKIC
- ProtClustDB:   CLSK638084
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 29459; Mature: 29459

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKTRAVVLKEVKFREQSKICSLYTRDFGRISVILKGGRNLKSRLSGLFCTGSLLEVVL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
YNRSNRDLQLVSEARIIRSPMTAEPSMERFSAIYRLIEILKISTGNEEKNIRLFNALERT
HCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LEKLCAPCRNADAAVAWFMLKLISESGFEPSIEQCVTTGKSILPMLQEGSADDLCLTYDP
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCCCCCEEEEECC
GGVSLPVPAAQKGPPGQRLPVQVYLLMRTLNRLDIRSIDEIDIPADNSRLLCDILQNYCS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LHNNYNPSSKNRRIISRILYE
HCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MLTKTRAVVLKEVKFREQSKICSLYTRDFGRISVILKGGRNLKSRLSGLFCTGSLLEVVL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
YNRSNRDLQLVSEARIIRSPMTAEPSMERFSAIYRLIEILKISTGNEEKNIRLFNALERT
HCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LEKLCAPCRNADAAVAWFMLKLISESGFEPSIEQCVTTGKSILPMLQEGSADDLCLTYDP
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCCCCCEEEEECC
GGVSLPVPAAQKGPPGQRLPVQVYLLMRTLNRLDIRSIDEIDIPADNSRLLCDILQNYCS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LHNNYNPSSKNRRIISRILYE
HCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA