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The map label for this gene is infC

Identifier: 189499157

GI number: 189499157

Start: 164758

End: 165366

Strand: Reverse

Name: infC

Synonym: Cphamn1_0171

Alternate gene names: 189499157

Gene position: 165366-164758 (Counterclockwise)

Preceding gene: 189499158

Following gene: 189499156

Centisome position: 6.04

GC content: 45.16

Gene sequence:

>609_bases
ATGAGAAAAAAAAGAAGCGCTCCTCAAAAACCAAAAGTAACGTATCGAGTGAACGGGCAGATCAGAGTGCCTGAGGTTAG
AGTAGTTTTTAAAGACGGCTCACAGGAGATCATCAAAACAAGCCAGGCAATTAAAATGGCCGAGCAAGAGGGGCTTGATC
TCATAGAAGTACAGCCTACAGCCACGCCTCCTGTCTGCAAGATGGACAATTACGGAAAGCTGCAGTACAAACTTGATAAA
AACGACAGGGATCGGAAAAAGAAATCGAAACCGACGTCATTAAAAGAGCTCAGGTTTCACCCGAATACCGACAAGCACGA
TTTTGATTTCAAAGCAGCTCACCTTGAAGAGTTTCTTCGCAAGGGCAACAGGGTTCGCGCAACCGTTGTTTTTCTCGGTC
GCTCGATCATTTACAAGGACAAAGGCTATGAACTTGTCGAACGTCTGACCGAACGCCTCAGCACTGTCAGCAACCGCGAA
GGCTCCCCCAAATTTGAAGGGAAAAAGCTGTTCGTCTATTTCGAACCTGACAAGAAAAAAATCGAGGTACATGAGAGGAT
GCTGGCAAAAATGAAGAAGGAACAACAAAACAAAGAAGCGGAAAACTAA

Upstream 100 bases:

>100_bases
CTTCAGGCACTCAAAGATATGTTAGTAAAGGAAGTCCGAAACAAATCCTGACCGCACAGCGGGCAAAACATCTGCGTCAG
ATAACATAAATCACGACTGT

Downstream 100 bases:

>100_bases
TTTTTTACCGATAACAAAACGATACGATCATGCCGAAAATGAAATCCCACCGTGGCGCCTGCAAACGGTTTAAAAAAACC
GCATCGGGAAGGGTCAAACG

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MRKKRSAPQKPKVTYRVNGQIRVPEVRVVFKDGSQEIIKTSQAIKMAEQEGLDLIEVQPTATPPVCKMDNYGKLQYKLDK
NDRDRKKKSKPTSLKELRFHPNTDKHDFDFKAAHLEEFLRKGNRVRATVVFLGRSIIYKDKGYELVERLTERLSTVSNRE
GSPKFEGKKLFVYFEPDKKKIEVHERMLAKMKKEQQNKEAEN

Sequences:

>Translated_202_residues
MRKKRSAPQKPKVTYRVNGQIRVPEVRVVFKDGSQEIIKTSQAIKMAEQEGLDLIEVQPTATPPVCKMDNYGKLQYKLDK
NDRDRKKKSKPTSLKELRFHPNTDKHDFDFKAAHLEEFLRKGNRVRATVVFLGRSIIYKDKGYELVERLTERLSTVSNRE
GSPKFEGKKLFVYFEPDKKKIEVHERMLAKMKKEQQNKEAEN
>Mature_202_residues
MRKKRSAPQKPKVTYRVNGQIRVPEVRVVFKDGSQEIIKTSQAIKMAEQEGLDLIEVQPTATPPVCKMDNYGKLQYKLDK
NDRDRKKKSKPTSLKELRFHPNTDKHDFDFKAAHLEEFLRKGNRVRATVVFLGRSIIYKDKGYELVERLTERLSTVSNRE
GSPKFEGKKLFVYFEPDKKKIEVHERMLAKMKKEQQNKEAEN

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family

Homologues:

Organism=Escherichia coli, GI1788012, Length=167, Percent_Identity=36.5269461077844, Blast_Score=109, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IF3_CHLPB (B3EKG8)

Other databases:

- EMBL:   CP001101
- RefSeq:   YP_001958627.1
- ProteinModelPortal:   B3EKG8
- GeneID:   6373825
- GenomeReviews:   CP001101_GR
- KEGG:   cpb:Cphamn1_0171
- HOGENOM:   HBG744268
- OMA:   FDRRAPV
- ProtClustDB:   PRK00028
- GO:   GO:0005737
- HAMAP:   MF_00080
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814
- Gene3D:   G3DSA:3.10.20.80
- Gene3D:   G3DSA:3.30.110.10
- PANTHER:   PTHR10938
- TIGRFAMs:   TIGR00168

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N; SSF54364 IF3; SSF55200 IF3

EC number: NA

Molecular weight: Translated: 23682; Mature: 23682

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKRSAPQKPKVTYRVNGQIRVPEVRVVFKDGSQEIIKTSQAIKMAEQEGLDLIEVQPT
CCCCCCCCCCCCEEEEECCEEECCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCC
ATPPVCKMDNYGKLQYKLDKNDRDRKKKSKPTSLKELRFHPNTDKHDFDFKAAHLEEFLR
CCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCHHHEEECCCCCCCCCCCHHHHHHHHHH
KGNRVRATVVFLGRSIIYKDKGYELVERLTERLSTVSNREGSPKFEGKKLFVYFEPDKKK
CCCCEEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCH
IEVHERMLAKMKKEQQNKEAEN
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRKKRSAPQKPKVTYRVNGQIRVPEVRVVFKDGSQEIIKTSQAIKMAEQEGLDLIEVQPT
CCCCCCCCCCCCEEEEECCEEECCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCC
ATPPVCKMDNYGKLQYKLDKNDRDRKKKSKPTSLKELRFHPNTDKHDFDFKAAHLEEFLR
CCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCHHHEEECCCCCCCCCCCHHHHHHHHHH
KGNRVRATVVFLGRSIIYKDKGYELVERLTERLSTVSNREGSPKFEGKKLFVYFEPDKKK
CCCCEEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCH
IEVHERMLAKMKKEQQNKEAEN
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA