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The map label for this gene is rpsF

Identifier: 189499148

GI number: 189499148

Start: 160326

End: 160730

Strand: Direct

Name: rpsF

Synonym: Cphamn1_0162

Alternate gene names: 189499148

Gene position: 160326-160730 (Clockwise)

Preceding gene: 189499147

Following gene: 189499149

Centisome position: 5.86

GC content: 46.91

Gene sequence:

>405_bases
ATGGAGATAAAAAAACTTTACGAGTGCACCGTAATCATCAATGGCGGGCTTGAAGATGATGCAATTGCCGCAACCATGGA
TGAGGTGAGAAATGTTATCGCGAAAAACGGCGGTGACATTGAGAATGTGCTTGAGGTCGGGAGAAGAACTATGGCTTACC
CGATCGGCAAGCAGACAATCGGTTCGTATGCTCATATAGAGTTCCGGGGAGAACCCTCCGGCCTTGCAGCCATCGAAACA
GCTTTCCGTTATAACGAAAATATCCTGCGGTTTCTTATTGTGCATTTGAGCACACCTTTATTGGAAATGCGTAAGAGGGT
AGAAAAGTACAGTGTGGTGATCGGCAGTCCTGAAGACCAGAGTGAAGAGGATCAGCAAGAGGAGTCTGTTGCTGCGAAGA
AATAG

Upstream 100 bases:

>100_bases
GTGTTCATGTGGTATCCTGAATCCAAGGGACAGGGATGCGCAATACCTGATCCCCACCATTTGTATAAGCAAACATAATC
TTTTTAAGTTGCTTTGCGCT

Downstream 100 bases:

>100_bases
AATGCCTTTCACAATGACTACAGATAACTATGAATCGATACCTTTTGGATAAAACGGAGGAACGGTTATGGCTGAGTTAA
AAATGCCTGAAATCAACAGT

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MEIKKLYECTVIINGGLEDDAIAATMDEVRNVIAKNGGDIENVLEVGRRTMAYPIGKQTIGSYAHIEFRGEPSGLAAIET
AFRYNENILRFLIVHLSTPLLEMRKRVEKYSVVIGSPEDQSEEDQQEESVAAKK

Sequences:

>Translated_134_residues
MEIKKLYECTVIINGGLEDDAIAATMDEVRNVIAKNGGDIENVLEVGRRTMAYPIGKQTIGSYAHIEFRGEPSGLAAIET
AFRYNENILRFLIVHLSTPLLEMRKRVEKYSVVIGSPEDQSEEDQQEESVAAKK
>Mature_134_residues
MEIKKLYECTVIINGGLEDDAIAATMDEVRNVIAKNGGDIENVLEVGRRTMAYPIGKQTIGSYAHIEFRGEPSGLAAIET
AFRYNENILRFLIVHLSTPLLEMRKRVEKYSVVIGSPEDQSEEDQQEESVAAKK

Specific function: Binds together with S18 to 16S ribosomal RNA

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6_CHLPB (B3EKF9)

Other databases:

- EMBL:   CP001101
- RefSeq:   YP_001958618.1
- ProteinModelPortal:   B3EKF9
- SMR:   B3EKF9
- GeneID:   6373816
- GenomeReviews:   CP001101_GR
- KEGG:   cpb:Cphamn1_0162
- HOGENOM:   HBG747554
- OMA:   GSYAHIE
- ProtClustDB:   PRK00453
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00360
- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717
- Gene3D:   G3DSA:3.30.70.60
- TIGRFAMs:   TIGR00166

Pfam domain/function: PF01250 Ribosomal_S6; SSF54995 Ribosomal_S6

EC number: NA

Molecular weight: Translated: 14973; Mature: 14973

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS01048 RIBOSOMAL_S6

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKKLYECTVIINGGLEDDAIAATMDEVRNVIAKNGGDIENVLEVGRRTMAYPIGKQTI
CCCHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHC
GSYAHIEFRGEPSGLAAIETAFRYNENILRFLIVHLSTPLLEMRKRVEKYSVVIGSPEDQ
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCC
SEEDQQEESVAAKK
CHHHHHHHHHHCCC
>Mature Secondary Structure
MEIKKLYECTVIINGGLEDDAIAATMDEVRNVIAKNGGDIENVLEVGRRTMAYPIGKQTI
CCCHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHC
GSYAHIEFRGEPSGLAAIETAFRYNENILRFLIVHLSTPLLEMRKRVEKYSVVIGSPEDQ
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCC
SEEDQQEESVAAKK
CHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA