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The map label for this gene is 189499135

Identifier: 189499135

GI number: 189499135

Start: 141318

End: 142880

Strand: Reverse

Name: 189499135

Synonym: Cphamn1_0148

Alternate gene names: NA

Gene position: 142880-141318 (Counterclockwise)

Preceding gene: 189499136

Following gene: 189499134

Centisome position: 5.22

GC content: 54.13

Gene sequence:

>1563_bases
ATGGCAAACAAACCATTGGATATGTTACAAATTCGAAGATGTCTCGTTCTCTTACAGGAAGCCCGTTCAGTCCGGCAAAT
CCACCGGCTGACAGGCATCCACCGCAACACGGTCAAAAGCTACGTGGAGCGGTTCAAGCACAGCGGCAAAACCTATGCCG
AGCTTCTTGCGCTGCCAGACCATGACCTGGCTGAGCTGATCTACCCGCCACGCCACAACCATCAGGCTGACGACCGTTAC
CTCTATCTCTCAGGGCGATTACAGCACTATGCCGATGAACTGAAGCGCCCTCATGTCACCAGGCAGCGTCTTTGGGAAGA
ATACCTGGAACAACAACCCCATGGGTATCGCTATGCGCAATTCTGCCTGCACCTTGACCGCTATATCCAGCAGCATGAAC
CGACCATGCCGCAAGTCCATCATCCCGGCGACAAGCTGCAAATCGACTTTGCCGGCGACCCGTTACGGTATTATGACCCG
GTCGCGCATGAATGGATTAACTGCCCGGTCCTAGTCTGCTCCCTGCCCTGCAGCGCGATGTTCTACGCTGAGCCTTTGAC
GTCAAGCCGACAGGAGCACCTGATCCCGGCTCTCAATAGCGCATTGGCATACTTTGGCGGCGTTCCCCGCAACATCCTCA
GCGATAATATGGCGCAGGTCGTCACCAAGCCATCGCGTTACGAGCCGGTCTTTACGGAACTGGTCGAGCAGTGGGCCTTG
CACTACCGGACCAATATGCAGGCAACGCGGGTTGCCAAACCAAAGGATAAGGCGTCGGTGGAAAACAGTGTTCATATTGC
CTACCAGCAGATCTATGCTGCCATGCGCAACGAATGCCATCACTCGCTCAAAGCCTTGAAGCACCGTGTCAGGGAGTTGC
TGGAAAAAGCCAACGAACGAACCATGACGGCATATGGCAAGAGCCGCAAGGAACGCTTTCTGGAGCTGGAAAAGGAGCAT
CTGGCTCCCTTACCGCCAAAGCACTTTGTCTACAAACATCAGGCGAAAGCCAAGGTCAAGAAGAACTACCATGTCATTCT
CGGTGAAGACTGGCATCAGTACAGTGTACCGCACGCGTATATCGGTCAGCGGGTGAAGCTGATCTATGATGACGATGTGG
TCGAGATCTTCTGTGAGTACAAGCGCATCGCCGTCCATCAGCGTGCGTTTGTCCGCAACGGCTACAGTACCATCAAAGAA
CACATGCCGGAGTCTCACCGCAACTACCTCCTGCAGAAGGGATGGACGCCGGATGACTTCCTGGAAAAAGCCCATGAGAT
CGGTCCGGGCACCGAGGAAGTCGTCACCCGTTTTCTTGCAGCCAAGGCTTTCCCGGAACAGTCCTATGATGCCTGTATCG
GGCTGCTGCGACTGGCCAAAGGATTTGGCAGGAAACGGCTTGAAAACGCCTGCTCACTGGCGTTGCAAGGATCACGTGTC
ACGTATCGTATCGTGAAAACAATCCTGGAAAACAACCGTGACAAGCTGGTGCTTCCGACAGAAGAACAAGCGCCGATGCT
GCCGTTCCATGAAAATATCCGAGGGAAGCATTTCTACAACTAA

Upstream 100 bases:

>100_bases
CAATGTGTACCAGGCATTCCGGAGCATAGTGTACCACCCGTACTGGGCGGATTTGTAACATCAATACCTGTACCTTTGGC
ATCAAAAACCGGAGGTGCAG

Downstream 100 bases:

>100_bases
CCCATAGCTATCAGACAATGAACACACAACTTACTTTAGACCAGCTTCGCCGCATGAGGCTTCACGGAATGGGCAGAGGC
CTATGATGCCCTGCTTACTC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MANKPLDMLQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVERFKHSGKTYAELLALPDHDLAELIYPPRHNHQADDRY
LYLSGRLQHYADELKRPHVTRQRLWEEYLEQQPHGYRYAQFCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYDP
VAHEWINCPVLVCSLPCSAMFYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNMAQVVTKPSRYEPVFTELVEQWAL
HYRTNMQATRVAKPKDKASVENSVHIAYQQIYAAMRNECHHSLKALKHRVRELLEKANERTMTAYGKSRKERFLELEKEH
LAPLPPKHFVYKHQAKAKVKKNYHVILGEDWHQYSVPHAYIGQRVKLIYDDDVVEIFCEYKRIAVHQRAFVRNGYSTIKE
HMPESHRNYLLQKGWTPDDFLEKAHEIGPGTEEVVTRFLAAKAFPEQSYDACIGLLRLAKGFGRKRLENACSLALQGSRV
TYRIVKTILENNRDKLVLPTEEQAPMLPFHENIRGKHFYN

Sequences:

>Translated_520_residues
MANKPLDMLQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVERFKHSGKTYAELLALPDHDLAELIYPPRHNHQADDRY
LYLSGRLQHYADELKRPHVTRQRLWEEYLEQQPHGYRYAQFCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYDP
VAHEWINCPVLVCSLPCSAMFYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNMAQVVTKPSRYEPVFTELVEQWAL
HYRTNMQATRVAKPKDKASVENSVHIAYQQIYAAMRNECHHSLKALKHRVRELLEKANERTMTAYGKSRKERFLELEKEH
LAPLPPKHFVYKHQAKAKVKKNYHVILGEDWHQYSVPHAYIGQRVKLIYDDDVVEIFCEYKRIAVHQRAFVRNGYSTIKE
HMPESHRNYLLQKGWTPDDFLEKAHEIGPGTEEVVTRFLAAKAFPEQSYDACIGLLRLAKGFGRKRLENACSLALQGSRV
TYRIVKTILENNRDKLVLPTEEQAPMLPFHENIRGKHFYN
>Mature_519_residues
ANKPLDMLQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVERFKHSGKTYAELLALPDHDLAELIYPPRHNHQADDRYL
YLSGRLQHYADELKRPHVTRQRLWEEYLEQQPHGYRYAQFCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYDPV
AHEWINCPVLVCSLPCSAMFYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNMAQVVTKPSRYEPVFTELVEQWALH
YRTNMQATRVAKPKDKASVENSVHIAYQQIYAAMRNECHHSLKALKHRVRELLEKANERTMTAYGKSRKERFLELEKEHL
APLPPKHFVYKHQAKAKVKKNYHVILGEDWHQYSVPHAYIGQRVKLIYDDDVVEIFCEYKRIAVHQRAFVRNGYSTIKEH
MPESHRNYLLQKGWTPDDFLEKAHEIGPGTEEVVTRFLAAKAFPEQSYDACIGLLRLAKGFGRKRLENACSLALQGSRVT
YRIVKTILENNRDKLVLPTEEQAPMLPFHENIRGKHFYN

Specific function: Unknown

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR017895
- InterPro:   IPR001584
- InterPro:   IPR013249
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 60877; Mature: 60745

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANKPLDMLQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVERFKHSGKTYAELLALPD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCC
HDLAELIYPPRHNHQADDRYLYLSGRLQHYADELKRPHVTRQRLWEEYLEQQPHGYRYAQ
CCHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHH
FCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYDPVAHEWINCPVLVCSLPCSAM
HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHCHHHHHHCCCCEEEECCCCHHH
FYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNMAQVVTKPSRYEPVFTELVEQWAL
HHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
HYRTNMQATRVAKPKDKASVENSVHIAYQQIYAAMRNECHHSLKALKHRVRELLEKANER
HHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TMTAYGKSRKERFLELEKEHLAPLPPKHFVYKHQAKAKVKKNYHVILGEDWHQYSVPHAY
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCHHH
IGQRVKLIYDDDVVEIFCEYKRIAVHQRAFVRNGYSTIKEHMPESHRNYLLQKGWTPDDF
HCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCHHH
LEKAHEIGPGTEEVVTRFLAAKAFPEQSYDACIGLLRLAKGFGRKRLENACSLALQGSRV
HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHH
TYRIVKTILENNRDKLVLPTEEQAPMLPFHENIRGKHFYN
HHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
ANKPLDMLQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVERFKHSGKTYAELLALPD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCC
HDLAELIYPPRHNHQADDRYLYLSGRLQHYADELKRPHVTRQRLWEEYLEQQPHGYRYAQ
CCHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHH
FCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYDPVAHEWINCPVLVCSLPCSAM
HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHCHHHHHHCCCCEEEECCCCHHH
FYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNMAQVVTKPSRYEPVFTELVEQWAL
HHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
HYRTNMQATRVAKPKDKASVENSVHIAYQQIYAAMRNECHHSLKALKHRVRELLEKANER
HHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TMTAYGKSRKERFLELEKEHLAPLPPKHFVYKHQAKAKVKKNYHVILGEDWHQYSVPHAY
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCHHH
IGQRVKLIYDDDVVEIFCEYKRIAVHQRAFVRNGYSTIKEHMPESHRNYLLQKGWTPDDF
HCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCHHH
LEKAHEIGPGTEEVVTRFLAAKAFPEQSYDACIGLLRLAKGFGRKRLENACSLALQGSRV
HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHH
TYRIVKTILENNRDKLVLPTEEQAPMLPFHENIRGKHFYN
HHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]