Click here to switch to the map view.

The map label for this gene is ybeB [H]

Identifier: 189499115

GI number: 189499115

Start: 115935

End: 116366

Strand: Direct

Name: ybeB [H]

Synonym: Cphamn1_0124

Alternate gene names: 189499115

Gene position: 115935-116366 (Clockwise)

Preceding gene: 189499114

Following gene: 189499116

Centisome position: 4.24

GC content: 48.15

Gene sequence:

>432_bases
ATGTTTATGGTTGAGCAAGATGGTGGAGAAGGCAGGATAGTGGACGTAAAAGAGGTGGCGTTAAGTGAACTGCTCGCCAA
AAGAGCGGCAGAGCTTTCGCTGGAAAGAAAATGTGACGATGTCGTTATACTCGATGTCAGGGATGTGAGTGCGGTAACTG
ACTTTTTTGTGATTGCGACGGCTGATTCCGAGAGGAAGGCCAAAGCAGCCTATGAGCATATTGTCGACGAGTTGAAGCAC
GAAGATGAACGCCCTCTGCATATCGAGGGTGGAGATACCCTTCATTGGGTACTGATTGATTATTTCGATGTTGTCGTACA
TATTTTCATGCCTGAAGAACGGGCATTTTATGACCTTGAATCGTTGTGGGGCGACGCTCCAAAACAGACTCTGAAGGTAG
AGGGTGACAGGGTTGTTGCCGATGGCGGATGA

Upstream 100 bases:

>100_bases
TTTATACTTGTTCTCCGTTCCGGGAAAGCAGTAAGGCGTGAATGTTTTAATAATAGAGGGGGCCTCTAAAAAGTTATAGA
AGTGCCCTGGAGATAAATAG

Downstream 100 bases:

>100_bases
GAAATTCTCTCTTCGTCTTCCCTTTAACGGGGTATTCTGTTACATTACGCCCACTACTATACCTACAATAATCAGTTATT
AGAAAAGATATGCAGCGCGA

Product: iojap-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MFMVEQDGGEGRIVDVKEVALSELLAKRAAELSLERKCDDVVILDVRDVSAVTDFFVIATADSERKAKAAYEHIVDELKH
EDERPLHIEGGDTLHWVLIDYFDVVVHIFMPEERAFYDLESLWGDAPKQTLKVEGDRVVADGG

Sequences:

>Translated_143_residues
MFMVEQDGGEGRIVDVKEVALSELLAKRAAELSLERKCDDVVILDVRDVSAVTDFFVIATADSERKAKAAYEHIVDELKH
EDERPLHIEGGDTLHWVLIDYFDVVVHIFMPEERAFYDLESLWGDAPKQTLKVEGDRVVADGG
>Mature_143_residues
MFMVEQDGGEGRIVDVKEVALSELLAKRAAELSLERKCDDVVILDVRDVSAVTDFFVIATADSERKAKAAYEHIVDELKH
EDERPLHIEGGDTLHWVLIDYFDVVVHIFMPEERAFYDLESLWGDAPKQTLKVEGDRVVADGG

Specific function: Unknown

COG id: COG0799

COG function: function code S; Uncharacterized homolog of plant Iojap protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Iojap family [H]

Homologues:

Organism=Escherichia coli, GI87081768, Length=87, Percent_Identity=36.7816091954023, Blast_Score=73, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004394 [H]

Pfam domain/function: PF02410 DUF143 [H]

EC number: NA

Molecular weight: Translated: 16115; Mature: 16115

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMVEQDGGEGRIVDVKEVALSELLAKRAAELSLERKCDDVVILDVRDVSAVTDFFVIAT
CEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHEEEEEEEE
ADSERKAKAAYEHIVDELKHEDERPLHIEGGDTLHWVLIDYFDVVVHIFMPEERAFYDLE
CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEHHHHHHHHHHHEEECCCCHHHEEHH
SLWGDAPKQTLKVEGDRVVADGG
HHCCCCCCCEEEECCCEEEECCC
>Mature Secondary Structure
MFMVEQDGGEGRIVDVKEVALSELLAKRAAELSLERKCDDVVILDVRDVSAVTDFFVIAT
CEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHEEEEEEEE
ADSERKAKAAYEHIVDELKHEDERPLHIEGGDTLHWVLIDYFDVVVHIFMPEERAFYDLE
CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEHHHHHHHHHHHEEECCCCHHHEEHH
SLWGDAPKQTLKVEGDRVVADGG
HHCCCCCCCEEEECCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]