Click here to switch to the map view.

The map label for this gene is yhjC [H]

Identifier: 189352270

GI number: 189352270

Start: 315079

End: 316074

Strand: Direct

Name: yhjC [H]

Synonym: BMULJ_03489

Alternate gene names: 189352270

Gene position: 315079-316074 (Clockwise)

Preceding gene: 189352269

Following gene: 189352272

Centisome position: 12.74

GC content: 70.78

Gene sequence:

>996_bases
GTGGACAATCCGATTCGCGCGATGCGCATCTTTGCGCGCATCGTCGAGATGAACAGCTTTACGCGCGCGGCGCTGTCGCT
CGGCATTTCGCGCGCGACCGCGACGCGCACCGTGCAGGAGCTGGAAGCGGCGCTCGGCATGCCGCTGCTCGTGCGCACGA
CGCGCGCGCTGCGGACGACGCCGGAGGGCGACGCGTACTATCGGCGCTGCCTGCGGATCACGGCGGACGTCGACGAACTC
GAGGCGAGCATCCGTCGCGCCGCGCGGCATCCGAGCGGGCCGCAGCGCGTCGATCTGCCGGGGCCGGTTGCGAGCGCGAT
CGTGCTGCCGGCGCTCGGCACATTTCATGCACGGCATCCCGATCTCGTGCTGATGCTCGGCGTGTCGGTGCGCGCGGCCG
ATATGGTCGGCGATGCGGTCGACTGCAGCGTCCGCCTCGGCGAGCTGCCCGATTCGTCATTTGTCGCGCGTCCGCTCGGC
GCGCTCGAACGCGTGACCTGCGCCAGTCCCGCGTATCTCGATCGTTGCGGCGTGCCGCGCACGCTCGACGATCTCGACAG
CCATCGCGCGGTCGGTAGCACGTCGGGATCCGGGCAGCGCGCAGCCGAATGCGACTTCATGGTCGACGGCGCGGTGCGCA
AGATCAGGCTCGACGTCATCGTCGGCGTCGACGACGAGCACGCGTACCTGGCATGCGGCGTACACGGACTCGGGCTGATT
CAGCCGCCGCGTGCGGTCGCGCAGCCGTTGATCGATGCGGGGCTGCTGCGGGACGTGTTGCCGCAGTGGCAGCCGGCGGC
GGTGCCCGTATCGGCCGTGTATGTGAAGCGTCCGCACGTGTCGCCCGGCGTGCGCGCATTCGTCGACTGGATCGCGGAGC
GGTTCGAGGCCGCTGCGCGGGAGCGGGCGGCGGGCGTGATCGGGTGGGAGGCGAGATGGCGCGCGCCGGAGCGGATCGAT
ATGCCGGTTGAGGGGGTGTCGGCCGCGATCGCGTGA

Upstream 100 bases:

>100_bases
CGCGTGGACACGTTATGACGTGTCCGCGCGGTTTCCTTCGACACGCATCGGCGGCGCGTGCGAGCACGTCGCCGATGCGG
CAACCAGGCAGGATATCCCG

Downstream 100 bases:

>100_bases
GGGCGGTGCAATCGCCCGGCAACGTGGCCCGGACATGCGCGGTGCGCGGGCGTTGCGCAGCAGCGTGTCGTGCTATGTGG
CGGCAGCGACACGTCGCGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MDNPIRAMRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTTPEGDAYYRRCLRITADVDEL
EASIRRAARHPSGPQRVDLPGPVASAIVLPALGTFHARHPDLVLMLGVSVRAADMVGDAVDCSVRLGELPDSSFVARPLG
ALERVTCASPAYLDRCGVPRTLDDLDSHRAVGSTSGSGQRAAECDFMVDGAVRKIRLDVIVGVDDEHAYLACGVHGLGLI
QPPRAVAQPLIDAGLLRDVLPQWQPAAVPVSAVYVKRPHVSPGVRAFVDWIAERFEAAARERAAGVIGWEARWRAPERID
MPVEGVSAAIA

Sequences:

>Translated_331_residues
MDNPIRAMRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTTPEGDAYYRRCLRITADVDEL
EASIRRAARHPSGPQRVDLPGPVASAIVLPALGTFHARHPDLVLMLGVSVRAADMVGDAVDCSVRLGELPDSSFVARPLG
ALERVTCASPAYLDRCGVPRTLDDLDSHRAVGSTSGSGQRAAECDFMVDGAVRKIRLDVIVGVDDEHAYLACGVHGLGLI
QPPRAVAQPLIDAGLLRDVLPQWQPAAVPVSAVYVKRPHVSPGVRAFVDWIAERFEAAARERAAGVIGWEARWRAPERID
MPVEGVSAAIA
>Mature_331_residues
MDNPIRAMRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTTPEGDAYYRRCLRITADVDEL
EASIRRAARHPSGPQRVDLPGPVASAIVLPALGTFHARHPDLVLMLGVSVRAADMVGDAVDCSVRLGELPDSSFVARPLG
ALERVTCASPAYLDRCGVPRTLDDLDSHRAVGSTSGSGQRAAECDFMVDGAVRKIRLDVIVGVDDEHAYLACGVHGLGLI
QPPRAVAQPLIDAGLLRDVLPQWQPAAVPVSAVYVKRPHVSPGVRAFVDWIAERFEAAARERAAGVIGWEARWRAPERID
MPVEGVSAAIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=36.551724137931, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=32.312925170068, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=27.3972602739726, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=27.891156462585, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=24.1610738255034, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081978, Length=183, Percent_Identity=30.6010928961749, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=25.0871080139373, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789173, Length=305, Percent_Identity=26.2295081967213, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=22.7891156462585, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35640; Mature: 35640

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNPIRAMRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
PEGDAYYRRCLRITADVDELEASIRRAARHPSGPQRVDLPGPVASAIVLPALGTFHARHP
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
DLVLMLGVSVRAADMVGDAVDCSVRLGELPDSSFVARPLGALERVTCASPAYLDRCGVPR
CEEEEECCCHHHHHHHCCHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCC
TLDDLDSHRAVGSTSGSGQRAAECDFMVDGAVRKIRLDVIVGVDDEHAYLACGVHGLGLI
CHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEEEECCCCCCEEEECCCCCCCC
QPPRAVAQPLIDAGLLRDVLPQWQPAAVPVSAVYVKRPHVSPGVRAFVDWIAERFEAAAR
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
ERAAGVIGWEARWRAPERIDMPVEGVSAAIA
HHHCCEECCHHHCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MDNPIRAMRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
PEGDAYYRRCLRITADVDELEASIRRAARHPSGPQRVDLPGPVASAIVLPALGTFHARHP
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
DLVLMLGVSVRAADMVGDAVDCSVRLGELPDSSFVARPLGALERVTCASPAYLDRCGVPR
CEEEEECCCHHHHHHHCCHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCC
TLDDLDSHRAVGSTSGSGQRAAECDFMVDGAVRKIRLDVIVGVDDEHAYLACGVHGLGLI
CHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEEEECCCCCCEEEECCCCCCCC
QPPRAVAQPLIDAGLLRDVLPQWQPAAVPVSAVYVKRPHVSPGVRAFVDWIAERFEAAAR
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
ERAAGVIGWEARWRAPERIDMPVEGVSAAIA
HHHCCEECCHHHCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]