Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
---|---|
Accession | NC_010793 |
Length | 2,008,987 |
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The map label for this gene is dnaJ [H]
Identifier: 189184785
GI number: 189184785
Start: 1918691
End: 1919824
Strand: Reverse
Name: dnaJ [H]
Synonym: OTT_1878
Alternate gene names: 189184785
Gene position: 1919824-1918691 (Counterclockwise)
Preceding gene: 189184786
Following gene: 189184784
Centisome position: 95.56
GC content: 33.95
Gene sequence:
>1134_bases ATGTCTGAATTAGATTATTATCAAGTTCTAGGAGTGTCTAGAACTGCTTCTCAGGAGGAGATAAAAAGGGCTTATCGTAA GCTGGTTCTCAAGTATCATCCTGATCATAATCCTGGGGATAAAAATGCTGAACAAAAGATTAAGAACATTAATGAAGCAT ATGATATACTAAAGGATGAGAAAAAAAGAAGTGCGTATGATCAATTAGGTCACCAAACATTTAAAAACAGTGGAGGTGGG AACTACCAGCAACATCATGGGTTTACTGGAGGAATTGATCCAAATGATATTTTTGAAAATATATTTGGTGACTTCATGGG GGCAAGACGTTCATCAAAAACTGCTTTTTCTAAAAAAGCTGGAGCTAATTTAAAATATGATATTTCTTTAACTTTAGAAG AAGCATTTTATGGAGTTACTAAAATTATAAGTTTTAAAACAGCGCTGACATGTGAGGCTTGTACTGGAAAAGGTAGTTTA GATAACAATAGCACATCAAGTTGTCCTACATGTCGAGGAAGTGGAGTAACTAGATCTCAACAAGGCTTCTTTTTTTTTGA AAACACTTGTCAAACCTGTCGTGGAGCTGGGCACGTCATTAAAAATCCTTGTACAAAATGTTATGGTGAAGGCAGATATA TTAATACAAGAAATCTTGAAGTTAAGATACCTGCAGGAGTAAAAGAAGGTAGTAGAATTAAACTTACTGGTGAAGGTGAA GCTGGAAGTAGAGGAGGTAAAACTGGTGATTTGTATGTTTGCATAACACTTATTCCTCATAATACTTTTTCTGTTGACGG TAATGATCTACATTGCCAGCTTGATATTAATTGCACTACAGCTGCATTAGGTGGTGAAGTAGAGGTTACAGATATAACAG GAAGCAAATTAAAACTTAAGATACCAGCTGGTACTCAAAATAATCATAAATTAAAACTTAGTGGTAAAGGAATGCAAATT TTGCATTCTGATCGCTGTGGAAATATGATTGTTCACGTTAATATCAAGGTACCAAAAAGTTTAACTAAATCTCAAAGAGA ACTAATGATTAAATTAGATAAAGAGCTTAATGAAGCATCAGAAGAAGGGTTCTTAAGTAAAGTAAGAAATTTTTGGACTA GTGGTAGTGAATAA
Upstream 100 bases:
>100_bases GATAAAAAGTAATAAATTACTCTAGATTTACTAATACTATTATAGTATTAGTAAATTGTTTATATATTATAAAGTATCAT CAATATAGAATAAATGTTAT
Downstream 100 bases:
>100_bases GAATAAATTATATGCCATTTAAGTAGTTACTAATAGTTTAAAATAAGTATTGTAAGGAAACAGTTGGATTGAATAACATT CATACTCCAGTGCTAGCTAC
Product: dnaJ protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MSELDYYQVLGVSRTASQEEIKRAYRKLVLKYHPDHNPGDKNAEQKIKNINEAYDILKDEKKRSAYDQLGHQTFKNSGGG NYQQHHGFTGGIDPNDIFENIFGDFMGARRSSKTAFSKKAGANLKYDISLTLEEAFYGVTKIISFKTALTCEACTGKGSL DNNSTSSCPTCRGSGVTRSQQGFFFFENTCQTCRGAGHVIKNPCTKCYGEGRYINTRNLEVKIPAGVKEGSRIKLTGEGE AGSRGGKTGDLYVCITLIPHNTFSVDGNDLHCQLDINCTTAALGGEVEVTDITGSKLKLKIPAGTQNNHKLKLSGKGMQI LHSDRCGNMIVHVNIKVPKSLTKSQRELMIKLDKELNEASEEGFLSKVRNFWTSGSE
Sequences:
>Translated_377_residues MSELDYYQVLGVSRTASQEEIKRAYRKLVLKYHPDHNPGDKNAEQKIKNINEAYDILKDEKKRSAYDQLGHQTFKNSGGG NYQQHHGFTGGIDPNDIFENIFGDFMGARRSSKTAFSKKAGANLKYDISLTLEEAFYGVTKIISFKTALTCEACTGKGSL DNNSTSSCPTCRGSGVTRSQQGFFFFENTCQTCRGAGHVIKNPCTKCYGEGRYINTRNLEVKIPAGVKEGSRIKLTGEGE AGSRGGKTGDLYVCITLIPHNTFSVDGNDLHCQLDINCTTAALGGEVEVTDITGSKLKLKIPAGTQNNHKLKLSGKGMQI LHSDRCGNMIVHVNIKVPKSLTKSQRELMIKLDKELNEASEEGFLSKVRNFWTSGSE >Mature_376_residues SELDYYQVLGVSRTASQEEIKRAYRKLVLKYHPDHNPGDKNAEQKIKNINEAYDILKDEKKRSAYDQLGHQTFKNSGGGN YQQHHGFTGGIDPNDIFENIFGDFMGARRSSKTAFSKKAGANLKYDISLTLEEAFYGVTKIISFKTALTCEACTGKGSLD NNSTSSCPTCRGSGVTRSQQGFFFFENTCQTCRGAGHVIKNPCTKCYGEGRYINTRNLEVKIPAGVKEGSRIKLTGEGEA GSRGGKTGDLYVCITLIPHNTFSVDGNDLHCQLDINCTTAALGGEVEVTDITGSKLKLKIPAGTQNNHKLKLSGKGMQIL HSDRCGNMIVHVNIKVPKSLTKSQRELMIKLDKELNEASEEGFLSKVRNFWTSGSE
Specific function: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion. Unfolded proteins bind initially to dnaJ; upon
COG id: COG0484
COG function: function code O; DnaJ-class molecular chaperone with C-terminal Zn finger domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI205360838, Length=408, Percent_Identity=33.0882352941176, Blast_Score=223, Evalue=2e-58, Organism=Homo sapiens, GI205360840, Length=370, Percent_Identity=34.3243243243243, Blast_Score=220, Evalue=1e-57, Organism=Homo sapiens, GI4504511, Length=380, Percent_Identity=31.8421052631579, Blast_Score=162, Evalue=7e-40, Organism=Homo sapiens, GI194328758, Length=291, Percent_Identity=34.3642611683849, Blast_Score=152, Evalue=4e-37, Organism=Homo sapiens, GI194328760, Length=291, Percent_Identity=34.3642611683849, Blast_Score=152, Evalue=4e-37, Organism=Homo sapiens, GI5031741, Length=352, Percent_Identity=29.2613636363636, Blast_Score=140, Evalue=2e-33, Organism=Homo sapiens, GI7706495, Length=356, Percent_Identity=30.0561797752809, Blast_Score=134, Evalue=1e-31, Organism=Homo sapiens, GI5453690, Length=362, Percent_Identity=26.5193370165746, Blast_Score=111, Evalue=9e-25, Organism=Homo sapiens, GI194328762, Length=280, Percent_Identity=28.5714285714286, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI23503241, Length=103, Percent_Identity=48.5436893203884, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI6631085, Length=374, Percent_Identity=25.668449197861, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI201862518, Length=395, Percent_Identity=24.0506329113924, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI201862587, Length=395, Percent_Identity=24.0506329113924, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI56549115, Length=395, Percent_Identity=24.0506329113924, Blast_Score=99, Evalue=7e-21, Organism=Homo sapiens, GI47777312, Length=104, Percent_Identity=45.1923076923077, Blast_Score=92, Evalue=9e-19, Organism=Homo sapiens, GI4885495, Length=104, Percent_Identity=49.0384615384615, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI17388799, Length=104, Percent_Identity=49.0384615384615, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI21553335, Length=102, Percent_Identity=46.078431372549, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI194306642, Length=103, Percent_Identity=45.6310679611651, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI194306640, Length=103, Percent_Identity=45.6310679611651, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI24308127, Length=97, Percent_Identity=42.2680412371134, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI88501736, Length=106, Percent_Identity=39.622641509434, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI27151736, Length=106, Percent_Identity=39.622641509434, Blast_Score=85, Evalue=9e-17, Organism=Homo sapiens, GI22749377, Length=103, Percent_Identity=42.7184466019417, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI9558755, Length=100, Percent_Identity=43, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI72534740, Length=103, Percent_Identity=42.7184466019417, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI56687498, Length=72, Percent_Identity=56.9444444444444, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI39204547, Length=157, Percent_Identity=30.5732484076433, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI29126218, Length=64, Percent_Identity=56.25, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI45504382, Length=64, Percent_Identity=51.5625, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI68077168, Length=79, Percent_Identity=45.5696202531646, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI68077166, Length=79, Percent_Identity=45.5696202531646, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI21361912, Length=67, Percent_Identity=44.7761194029851, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI27735107, Length=85, Percent_Identity=42.3529411764706, Blast_Score=66, Evalue=7e-11, Organism=Escherichia coli, GI1786197, Length=379, Percent_Identity=43.2717678100264, Blast_Score=319, Evalue=2e-88, Organism=Escherichia coli, GI1787235, Length=356, Percent_Identity=28.9325842696629, Blast_Score=140, Evalue=9e-35, Organism=Caenorhabditis elegans, GI17553098, Length=356, Percent_Identity=37.0786516853933, Blast_Score=211, Evalue=5e-55, Organism=Caenorhabditis elegans, GI17553096, Length=356, Percent_Identity=37.0786516853933, Blast_Score=211, Evalue=6e-55, Organism=Caenorhabditis elegans, GI17507263, Length=392, Percent_Identity=30.3571428571429, Blast_Score=145, Evalue=4e-35, Organism=Caenorhabditis elegans, GI212645553, Length=353, Percent_Identity=29.1784702549575, Blast_Score=109, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17534355, Length=104, Percent_Identity=50, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17554644, Length=70, Percent_Identity=54.2857142857143, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI115532378, Length=86, Percent_Identity=44.1860465116279, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17563890, Length=224, Percent_Identity=26.7857142857143, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI86563276, Length=104, Percent_Identity=44.2307692307692, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17538236, Length=111, Percent_Identity=36.9369369369369, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17568643, Length=73, Percent_Identity=45.2054794520548, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17554900, Length=67, Percent_Identity=49.2537313432836, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324265, Length=357, Percent_Identity=35.0140056022409, Blast_Score=176, Evalue=8e-45, Organism=Saccharomyces cerevisiae, GI6323870, Length=257, Percent_Identity=34.2412451361868, Blast_Score=135, Evalue=1e-32, Organism=Saccharomyces cerevisiae, GI6321094, Length=380, Percent_Identity=31.5789473684211, Blast_Score=131, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6324252, Length=368, Percent_Identity=26.9021739130435, Blast_Score=100, Evalue=7e-22, Organism=Saccharomyces cerevisiae, GI6323119, Length=402, Percent_Identity=26.3681592039801, Blast_Score=97, Evalue=4e-21, Organism=Saccharomyces cerevisiae, GI6322194, Length=112, Percent_Identity=39.2857142857143, Blast_Score=77, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6320888, Length=103, Percent_Identity=35.9223300970874, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323813, Length=121, Percent_Identity=34.7107438016529, Blast_Score=71, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324321, Length=70, Percent_Identity=48.5714285714286, Blast_Score=71, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6322388, Length=68, Percent_Identity=47.0588235294118, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324103, Length=73, Percent_Identity=43.8356164383562, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI45552813, Length=374, Percent_Identity=32.0855614973262, Blast_Score=179, Evalue=2e-45, Organism=Drosophila melanogaster, GI45549272, Length=374, Percent_Identity=32.0855614973262, Blast_Score=179, Evalue=2e-45, Organism=Drosophila melanogaster, GI45552811, Length=381, Percent_Identity=32.0209973753281, Blast_Score=179, Evalue=3e-45, Organism=Drosophila melanogaster, GI24646562, Length=356, Percent_Identity=29.7752808988764, Blast_Score=145, Evalue=3e-35, Organism=Drosophila melanogaster, GI24646560, Length=356, Percent_Identity=29.7752808988764, Blast_Score=145, Evalue=3e-35, Organism=Drosophila melanogaster, GI24646558, Length=356, Percent_Identity=29.7752808988764, Blast_Score=145, Evalue=3e-35, Organism=Drosophila melanogaster, GI24646556, Length=356, Percent_Identity=29.7752808988764, Blast_Score=145, Evalue=3e-35, Organism=Drosophila melanogaster, GI21357547, Length=356, Percent_Identity=29.7752808988764, Blast_Score=145, Evalue=3e-35, Organism=Drosophila melanogaster, GI28574949, Length=357, Percent_Identity=28.2913165266106, Blast_Score=135, Evalue=3e-32, Organism=Drosophila melanogaster, GI20129487, Length=347, Percent_Identity=28.8184438040346, Blast_Score=126, Evalue=2e-29, Organism=Drosophila melanogaster, GI24584014, Length=347, Percent_Identity=28.8184438040346, Blast_Score=126, Evalue=2e-29, Organism=Drosophila melanogaster, GI19920464, Length=350, Percent_Identity=26.8571428571429, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI85726398, Length=366, Percent_Identity=27.3224043715847, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI24658562, Length=393, Percent_Identity=25.4452926208651, Blast_Score=108, Evalue=8e-24, Organism=Drosophila melanogaster, GI24658555, Length=393, Percent_Identity=25.4452926208651, Blast_Score=108, Evalue=8e-24, Organism=Drosophila melanogaster, GI24654066, Length=116, Percent_Identity=39.6551724137931, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI24654070, Length=116, Percent_Identity=39.6551724137931, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI24654068, Length=116, Percent_Identity=39.6551724137931, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI24654072, Length=116, Percent_Identity=39.6551724137931, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI161077138, Length=65, Percent_Identity=49.2307692307692, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI17737735, Length=64, Percent_Identity=50, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI28574723, Length=64, Percent_Identity=50, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24668523, Length=64, Percent_Identity=50, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24641698, Length=105, Percent_Identity=35.2380952380952, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24641696, Length=105, Percent_Identity=35.2380952380952, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24668492, Length=71, Percent_Identity=42.2535211267606, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI17648033, Length=117, Percent_Identity=38.4615384615385, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI18858081, Length=63, Percent_Identity=49.2063492063492, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24584630, Length=117, Percent_Identity=38.4615384615385, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI21355073, Length=130, Percent_Identity=33.8461538461538, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012724 - InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 - InterPro: IPR001305 - InterPro: IPR001878 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C; PF00684 DnaJ_CXXCXGXG [H]
EC number: NA
Molecular weight: Translated: 41492; Mature: 41361
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: PS50076 DNAJ_2 ; PS00637 DNAJ_CXXCXGXG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELDYYQVLGVSRTASQEEIKRAYRKLVLKYHPDHNPGDKNAEQKIKNINEAYDILKDE CCCCCCCCEECCCCCCCHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH KKRSAYDQLGHQTFKNSGGGNYQQHHGFTGGIDPNDIFENIFGDFMGARRSSKTAFSKKA HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHC GANLKYDISLTLEEAFYGVTKIISFKTALTCEACTGKGSLDNNSTSSCPTCRGSGVTRSQ CCCEEEEEEEEHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC QGFFFFENTCQTCRGAGHVIKNPCTKCYGEGRYINTRNLEVKIPAGVKEGSRIKLTGEGE CCEEEECCHHHHHHCCCCHHHCCHHHHCCCCEEEECCCEEEEECCCCCCCCEEEEEECCC AGSRGGKTGDLYVCITLIPHNTFSVDGNDLHCQLDINCTTAALGGEVEVTDITGSKLKLK CCCCCCCCCCEEEEEEEECCCEEEECCCEEEEEEECCEEEEECCCEEEEEEECCCEEEEE IPAGTQNNHKLKLSGKGMQILHSDRCGNMIVHVNIKVPKSLTKSQRELMIKLDKELNEAS ECCCCCCCCEEEEECCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH EEGFLSKVRNFWTSGSE HHHHHHHHHHHHCCCCC >Mature Secondary Structure SELDYYQVLGVSRTASQEEIKRAYRKLVLKYHPDHNPGDKNAEQKIKNINEAYDILKDE CCCCCCCEECCCCCCCHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH KKRSAYDQLGHQTFKNSGGGNYQQHHGFTGGIDPNDIFENIFGDFMGARRSSKTAFSKKA HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHC GANLKYDISLTLEEAFYGVTKIISFKTALTCEACTGKGSLDNNSTSSCPTCRGSGVTRSQ CCCEEEEEEEEHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC QGFFFFENTCQTCRGAGHVIKNPCTKCYGEGRYINTRNLEVKIPAGVKEGSRIKLTGEGE CCEEEECCHHHHHHCCCCHHHCCHHHHCCCCEEEECCCEEEEECCCCCCCCEEEEEECCC AGSRGGKTGDLYVCITLIPHNTFSVDGNDLHCQLDINCTTAALGGEVEVTDITGSKLKLK CCCCCCCCCCEEEEEEEECCCEEEECCCEEEEEEECCEEEEECCCEEEEEEECCCEEEEE IPAGTQNNHKLKLSGKGMQILHSDRCGNMIVHVNIKVPKSLTKSQRELMIKLDKELNEAS ECCCCCCCCEEEEECCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH EEGFLSKVRNFWTSGSE HHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA