Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
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Accession | NC_010793 |
Length | 2,008,987 |
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The map label for this gene is 189184763
Identifier: 189184763
GI number: 189184763
Start: 1887436
End: 1887969
Strand: Reverse
Name: 189184763
Synonym: OTT_1856
Alternate gene names: NA
Gene position: 1887969-1887436 (Counterclockwise)
Preceding gene: 189184764
Following gene: 189184762
Centisome position: 93.98
GC content: 28.65
Gene sequence:
>534_bases ATGCGCCCTGTAGTATTCGATTTTTTAACTAATAGTTGTAATTTTATTAAAAAAAATAGTAACAATAATGACACAATATT TTATAACTTTATTGGAAATATCATTCCACCAGAATGGAGAAAGCTAACTGGAGATAATGGAAAAGCATTAAGTAAAACAT CTAAACAGCTTTTATCATTCATAGTATTTAGACTACATATCTATTACAACAAAGATATAGATGAATTACAGGAAAGTTAT CAGCTTTATGAGGATAAGCTTAATGTTGGTCAAAGAAGAGTTAGGCAATGCTTAGTAGAATTAAGAGATGCAGGTTTTGT TGAAGTTGAAAATAGGACAATAATTAAAGACAGCTTTAAGTTGCGTAATGTTCCATGTATAAAACTTCTAAAAAATTTTC AGCGTTTCACTGAAAAAGAAACAAAAGGAGAAAAAATTATTGATCTAACCCAAAAAATTTTTCGCTCCAACCTGAAAGAA ATTTCAGGTGAACCTGAAAAAAGTTTCAGGTACATATATAGTCATTTACAATGA
Upstream 100 bases:
>100_bases TCTACCTATTTTCTACCTTTTGCATAAAAATTTGATGGTAATTTGTAAAAAAAATTATTTTCTAAAACACCTACTATAGC TGTATTTTTGGAGATGAAAA
Downstream 100 bases:
>100_bases AGTTTGAGCATAGAAAAAGCGACAATAGCATCATAAGATTTACCAACATGATATTTTATACGCAAACTTCATTGTAAATG ACTATATAGATATAATAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 177; Mature: 177
Protein sequence:
>177_residues MRPVVFDFLTNSCNFIKKNSNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLHIYYNKDIDELQESY QLYEDKLNVGQRRVRQCLVELRDAGFVEVENRTIIKDSFKLRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKE ISGEPEKSFRYIYSHLQ
Sequences:
>Translated_177_residues MRPVVFDFLTNSCNFIKKNSNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLHIYYNKDIDELQESY QLYEDKLNVGQRRVRQCLVELRDAGFVEVENRTIIKDSFKLRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKE ISGEPEKSFRYIYSHLQ >Mature_177_residues MRPVVFDFLTNSCNFIKKNSNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLHIYYNKDIDELQESY QLYEDKLNVGQRRVRQCLVELRDAGFVEVENRTIIKDSFKLRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKE ISGEPEKSFRYIYSHLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21027; Mature: 21027
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPVVFDFLTNSCNFIKKNSNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSF CCCCHHHHHHCCCHHEECCCCCCCEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHHH IVFRLHIYYNKDIDELQESYQLYEDKLNVGQRRVRQCLVELRDAGFVEVENRTIIKDSFK HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEECCCHH LRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKEISGEPEKSFRYIYSHLQ HCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC >Mature Secondary Structure MRPVVFDFLTNSCNFIKKNSNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSF CCCCHHHHHHCCCHHEECCCCCCCEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHHH IVFRLHIYYNKDIDELQESYQLYEDKLNVGQRRVRQCLVELRDAGFVEVENRTIIKDSFK HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEECCCHH LRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKEISGEPEKSFRYIYSHLQ HCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA