Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
---|---|
Accession | NC_010793 |
Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is 189184598
Identifier: 189184598
GI number: 189184598
Start: 1715274
End: 1716428
Strand: Reverse
Name: 189184598
Synonym: OTT_1691
Alternate gene names: NA
Gene position: 1716428-1715274 (Counterclockwise)
Preceding gene: 189184601
Following gene: 189184597
Centisome position: 85.44
GC content: 31.26
Gene sequence:
>1155_bases ATGGAAATAGAACAACATATTAGGCAAATTATACGCTCAGAAAATAACATAACAGTTGAAAATCTAATGTCTATTGTTAT GGAATCAAGGTATAATTCTTATTATCGTATTCAGCAACCGTTAGGTAAAGCTGGAGATTTTATCACTGCTCCAGAAATTT CACAAATGTTTGGAGAAATGATAGGAATATGGTGTATAGATCTATGGCATAAGCTTAACCGTCCACAGAAAATTGATCTT ATAGAACTAGGCCCAGGTAAGGGCACATTGTTGTGTGATATCTTAAATGCTACAAGACATATAAAAAAGTTTAGTACTGC TATCAGCCTTACTCTTGTAGAAATTAATTGCAGTCTTAAAAAGATTCAGCAAGACAATTTATTAAGTTTTAATGTGCCTA TAAAATGGGTTAAATCAGTTAACCATATTGTTAGTAGTTATCCAACCATTATTTTAGCAAATGAATTTTTTGATGCTTTA CCAATCAAGCAATACATAAAAAAAATCAATCAACAGTCTGGACAAATAAATTGGTTAGAACGAGTAGTGAAAATTGATAA CAATAATAAATTATATTTTGATACAATAGATGCTGATATTAATGAACATAAGTTTTTAAAGTTGCACAATAATGCTCCAA ACGGTGGGGTGCTAGAAATCTCGCCAGCCCAACATCAGACTATACAAGCAGTGAGCAATTTATTGAAAAAAAATGGAGGA GGTAGCTTAATAATTGATTATGGTTATGATATTTCTCCTGAACAGCGAAAAAATTATCAATATAATAGTAGTTTGCAGGC TGTAAAACATCACCAATATCATCCATTATTAGAAAATTTAGGATGTGCTGACTTGTCAGCACATGTTGACTTTTGGAGCT TGAAAAATATTGCCGTTGCTGAAGGTATAGCAAGTTTTGGAAGCATATCACAAAATGTTCTCTTACATAAATTAGGTATA AAAACAAGATTAAATATGTTAAAACAAATAAACTCAGATGAGAATTTAGCTTCAAAATTAGATCTACAATATAATAGGCT TACATATGTTCGAGCTATGGGAGAACTTTTCAAAGCAATAGCAATAACTTCAGCACCTTCTATTATTCCGCTTGGGTTTT GCAATAGCAACTACAATAGTTTTAAGCAATTGTAG
Upstream 100 bases:
>100_bases CTTAACAAAAATCTCTATTGATAAACTAAAAGAAAATGTATCACAATATAGTGACGCATATCAATATGAAAGAATAAAAA TTAAATAACATTATTTGCTT
Downstream 100 bases:
>100_bases TTTAAGTTGTATTATCTATTATCTAAAACACACGTCTACTTTAAATGATGATGTTTAAGATAGAATTTGAAAAATACATT TCGCTAAATCAAAATCTAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 384; Mature: 384
Protein sequence:
>384_residues MEIEQHIRQIIRSENNITVENLMSIVMESRYNSYYRIQQPLGKAGDFITAPEISQMFGEMIGIWCIDLWHKLNRPQKIDL IELGPGKGTLLCDILNATRHIKKFSTAISLTLVEINCSLKKIQQDNLLSFNVPIKWVKSVNHIVSSYPTIILANEFFDAL PIKQYIKKINQQSGQINWLERVVKIDNNNKLYFDTIDADINEHKFLKLHNNAPNGGVLEISPAQHQTIQAVSNLLKKNGG GSLIIDYGYDISPEQRKNYQYNSSLQAVKHHQYHPLLENLGCADLSAHVDFWSLKNIAVAEGIASFGSISQNVLLHKLGI KTRLNMLKQINSDENLASKLDLQYNRLTYVRAMGELFKAIAITSAPSIIPLGFCNSNYNSFKQL
Sequences:
>Translated_384_residues MEIEQHIRQIIRSENNITVENLMSIVMESRYNSYYRIQQPLGKAGDFITAPEISQMFGEMIGIWCIDLWHKLNRPQKIDL IELGPGKGTLLCDILNATRHIKKFSTAISLTLVEINCSLKKIQQDNLLSFNVPIKWVKSVNHIVSSYPTIILANEFFDAL PIKQYIKKINQQSGQINWLERVVKIDNNNKLYFDTIDADINEHKFLKLHNNAPNGGVLEISPAQHQTIQAVSNLLKKNGG GSLIIDYGYDISPEQRKNYQYNSSLQAVKHHQYHPLLENLGCADLSAHVDFWSLKNIAVAEGIASFGSISQNVLLHKLGI KTRLNMLKQINSDENLASKLDLQYNRLTYVRAMGELFKAIAITSAPSIIPLGFCNSNYNSFKQL >Mature_384_residues MEIEQHIRQIIRSENNITVENLMSIVMESRYNSYYRIQQPLGKAGDFITAPEISQMFGEMIGIWCIDLWHKLNRPQKIDL IELGPGKGTLLCDILNATRHIKKFSTAISLTLVEINCSLKKIQQDNLLSFNVPIKWVKSVNHIVSSYPTIILANEFFDAL PIKQYIKKINQQSGQINWLERVVKIDNNNKLYFDTIDADINEHKFLKLHNNAPNGGVLEISPAQHQTIQAVSNLLKKNGG GSLIIDYGYDISPEQRKNYQYNSSLQAVKHHQYHPLLENLGCADLSAHVDFWSLKNIAVAEGIASFGSISQNVLLHKLGI KTRLNMLKQINSDENLASKLDLQYNRLTYVRAMGELFKAIAITSAPSIIPLGFCNSNYNSFKQL
Specific function: Unknown
COG id: COG1565
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21396487, Length=382, Percent_Identity=31.151832460733, Blast_Score=172, Evalue=3e-43, Organism=Homo sapiens, GI145701028, Length=306, Percent_Identity=24.8366013071895, Blast_Score=88, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193211224, Length=377, Percent_Identity=32.0954907161804, Blast_Score=149, Evalue=2e-36, Organism=Drosophila melanogaster, GI24645885, Length=386, Percent_Identity=27.979274611399, Blast_Score=146, Evalue=2e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43566; Mature: 43566
Theoretical pI: Translated: 8.83; Mature: 8.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIEQHIRQIIRSENNITVENLMSIVMESRYNSYYRIQQPLGKAGDFITAPEISQMFGEM CCHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHH IGIWCIDLWHKLNRPQKIDLIELGPGKGTLLCDILNATRHIKKFSTAISLTLVEINCSLK HHHHHHHHHHHCCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHHHEEEEEEEEECCHHH KIQQDNLLSFNVPIKWVKSVNHIVSSYPTIILANEFFDALPIKQYIKKINQQSGQINWLE HHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEHHHHHHCCHHHHHHHHHHCCCCHHHHH RVVKIDNNNKLYFDTIDADINEHKFLKLHNNAPNGGVLEISPAQHQTIQAVSNLLKKNGG HHHEECCCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHCCCC GSLIIDYGYDISPEQRKNYQYNSSLQAVKHHQYHPLLENLGCADLSAHVDFWSLKNIAVA CCEEEECCCCCCCHHHCCCCCCCHHHHHHHCCCCHHHHHCCCCCHHHCCCHHHHCCHHHH EGIASFGSISQNVLLHKLGIKTRLNMLKQINSDENLASKLDLQYNRLTYVRAMGELFKAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHH AITSAPSIIPLGFCNSNYNSFKQL HHCCCCCEEEEEECCCCHHHHHCC >Mature Secondary Structure MEIEQHIRQIIRSENNITVENLMSIVMESRYNSYYRIQQPLGKAGDFITAPEISQMFGEM CCHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHH IGIWCIDLWHKLNRPQKIDLIELGPGKGTLLCDILNATRHIKKFSTAISLTLVEINCSLK HHHHHHHHHHHCCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHHHEEEEEEEEECCHHH KIQQDNLLSFNVPIKWVKSVNHIVSSYPTIILANEFFDALPIKQYIKKINQQSGQINWLE HHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEHHHHHHCCHHHHHHHHHHCCCCHHHHH RVVKIDNNNKLYFDTIDADINEHKFLKLHNNAPNGGVLEISPAQHQTIQAVSNLLKKNGG HHHEECCCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHCCCC GSLIIDYGYDISPEQRKNYQYNSSLQAVKHHQYHPLLENLGCADLSAHVDFWSLKNIAVA CCEEEECCCCCCCHHHCCCCCCCHHHHHHHCCCCHHHHHCCCCCHHHCCCHHHHCCHHHH EGIASFGSISQNVLLHKLGIKTRLNMLKQINSDENLASKLDLQYNRLTYVRAMGELFKAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHH AITSAPSIIPLGFCNSNYNSFKQL HHCCCCCEEEEEECCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA