Click here to switch to the map view.

The map label for this gene is intD [C]

Identifier: 189184529

GI number: 189184529

Start: 1649268

End: 1649810

Strand: Reverse

Name: intD [C]

Synonym: OTT_1622

Alternate gene names: 189184529

Gene position: 1649810-1649268 (Counterclockwise)

Preceding gene: 189184530

Following gene: 189184528

Centisome position: 82.12

GC content: 31.12

Gene sequence:

>543_bases
ATGACTAAATTTTTACAAGTATTATGTGGAGAAGCAAGTGCGTTGATAAGAGATTTTGCATTACTAGCGTTATATACTAG
AGCTAGAAAAAGGAATGTGTTAGAGATGGAATGGGACAATATAGATTTTGTAAGAAAAATATGGCATATACCAAAAACTA
AGAATGGAAAGGCGCAAAATATACCATTAACAGATGAGATAATAGAAATATTGCAAGCAAGGAAATTAACATCTAAAAGT
AAATGGATGCTATCAACTGATAGAAGCAAAAGCGGGCACTTGGAAAATCCTTATAGAGGATGGTATAAGATTTGTAAAAA
GGCAAGCATAAAAAATTTAAGGATACACGATCTAAGAAGGACGTTTGCAAGTTGTCTGTCAGATATAGGTGCAGGTCAGT
ATATAATTCGTGCAGCATTGAATCATATTAATTTTGAATCAACAAGTGATTATAGTATAGTTAGTACAGAGTTACTAAGA
GAGTATATGTCTAAGGTTACACAAATGATTAGTGGATATATGCAAAGTTATAAATATTTATAA

Upstream 100 bases:

>100_bases
AAGCAGTATATTTAATAAGGCAATAAAATGGGAATTAATAGACAGAAATCCTACACTAAGAATAGATAAAGACAGAGAAA
GACGTCTAAGTTACGATGAA

Downstream 100 bases:

>100_bases
TACTATCTGACTAATATAAACGTTGTGGTAAGAATAGTGCGACTTCATGTCGCACATGCATGTATGTAAACTAATTATCA
CAGGTAAAATCTGTGTTTGA

Product: putative integrase

Products: NA

Alternate protein names: Integrase Family Protein; Phage Integrase; Phage Integrase Family Protein; Phage Related Integrase; Site-Specific Recombinase Phage Integrase Family; Phage-Related Integrase; Tyrosine Recombinase XerD; Prophage; Site Specific Recombinase; Tyrosine Recombinase XerC; Site-Specific Recombinase Phage Integrase Family Protein; Bacteriophage Integrase

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MTKFLQVLCGEASALIRDFALLALYTRARKRNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKS
KWMLSTDRSKSGHLENPYRGWYKICKKASIKNLRIHDLRRTFASCLSDIGAGQYIIRAALNHINFESTSDYSIVSTELLR
EYMSKVTQMISGYMQSYKYL

Sequences:

>Translated_180_residues
MTKFLQVLCGEASALIRDFALLALYTRARKRNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKS
KWMLSTDRSKSGHLENPYRGWYKICKKASIKNLRIHDLRRTFASCLSDIGAGQYIIRAALNHINFESTSDYSIVSTELLR
EYMSKVTQMISGYMQSYKYL
>Mature_179_residues
TKFLQVLCGEASALIRDFALLALYTRARKRNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSK
WMLSTDRSKSGHLENPYRGWYKICKKASIKNLRIHDLRRTFASCLSDIGAGQYIIRAALNHINFESTSDYSIVSTELLRE
YMSKVTQMISGYMQSYKYL

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20976; Mature: 20844

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKFLQVLCGEASALIRDFALLALYTRARKRNVLEMEWDNIDFVRKIWHIPKTKNGKAQN
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCCCCCCCC
IPLTDEIIEILQARKLTSKSKWMLSTDRSKSGHLENPYRGWYKICKKASIKNLRIHDLRR
CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
TFASCLSDIGAGQYIIRAALNHINFESTSDYSIVSTELLREYMSKVTQMISGYMQSYKYL
HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKFLQVLCGEASALIRDFALLALYTRARKRNVLEMEWDNIDFVRKIWHIPKTKNGKAQN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCCCCCCCC
IPLTDEIIEILQARKLTSKSKWMLSTDRSKSGHLENPYRGWYKICKKASIKNLRIHDLRR
CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
TFASCLSDIGAGQYIIRAALNHINFESTSDYSIVSTELLREYMSKVTQMISGYMQSYKYL
HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA