Definition Orientia tsutsugamushi str. Ikeda, complete genome.
Accession NC_010793
Length 2,008,987

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The map label for this gene is yahD [C]

Identifier: 189184360

GI number: 189184360

Start: 1485654

End: 1486298

Strand: Reverse

Name: yahD [C]

Synonym: OTT_1453

Alternate gene names: 189184360

Gene position: 1486298-1485654 (Counterclockwise)

Preceding gene: 189184361

Following gene: 189184359

Centisome position: 73.98

GC content: 31.01

Gene sequence:

>645_bases
ATGATATTAAAATCTAAGACTAAGTATACCTTACATAGCGCTATTCAAGATGGTGACATTAAAAAAGTGAAGCAGCTTAT
TAATAAGGATATTACACTTGTCAATTCAAAATATAAAGATGGCACTACTGCTTTATCTGTAGCTTTGAAATATAAGAATC
TACCTATTGCAGAGATTTTACTAAGCAATGGAGCTAACGTAAACGCACAAGATAATGATGGGCATACTGCTTTACATCTT
GTTGTTGAAACAATTCAAGTATATTATGATTTTTTCGAAAAATACCCTACCTATTGCAATGATCATATAGCATTACTGTT
AAAATATAATGCTGATGTAAATATCGAAGATAATCAAGGTAATACACCTTTATCTGATGCTGTTGAATGTAAATGTGTAG
AGCCTTTAGCAATTATGCTAAAACATAATTCGACTAGTATTAATAAGAAATATGATGAAGGAGAAACACTACTACATATT
GCTGTTCGTAATGAAATCATAGCTGTTATACATCTTTTGATTGATTATGGCGCTGATATTGATGCAAAAGATGATAACGG
CATTACACCTATAGATTATGCTGCTAAAAGCGGTAATGCAGATGTATTCAATTTTCTAACTGAACAATTGGTCCCATGGT
ATTAA

Upstream 100 bases:

>100_bases
TATCTTAAACTACCAGAGATCGGAGAACGCTTAAGCGAATATTGTAAACTTCATGCTAGTTAAAATGTAGTAAATAATTG
AGAATGAAAGGATTAAATAT

Downstream 100 bases:

>100_bases
TTTTCAACAGACAACCATACATTAATTTCAAAAAATAAAGTTGACAAAAAGTATAATTAACATTAAGTTTATAAAAAATA
TTAAATTAGATAGATACTGC

Product: ankyrin repeat-containing protein 03_11

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MILKSKTKYTLHSAIQDGDIKKVKQLINKDITLVNSKYKDGTTALSVALKYKNLPIAEILLSNGANVNAQDNDGHTALHL
VVETIQVYYDFFEKYPTYCNDHIALLLKYNADVNIEDNQGNTPLSDAVECKCVEPLAIMLKHNSTSINKKYDEGETLLHI
AVRNEIIAVIHLLIDYGADIDAKDDNGITPIDYAAKSGNADVFNFLTEQLVPWY

Sequences:

>Translated_214_residues
MILKSKTKYTLHSAIQDGDIKKVKQLINKDITLVNSKYKDGTTALSVALKYKNLPIAEILLSNGANVNAQDNDGHTALHL
VVETIQVYYDFFEKYPTYCNDHIALLLKYNADVNIEDNQGNTPLSDAVECKCVEPLAIMLKHNSTSINKKYDEGETLLHI
AVRNEIIAVIHLLIDYGADIDAKDDNGITPIDYAAKSGNADVFNFLTEQLVPWY
>Mature_214_residues
MILKSKTKYTLHSAIQDGDIKKVKQLINKDITLVNSKYKDGTTALSVALKYKNLPIAEILLSNGANVNAQDNDGHTALHL
VVETIQVYYDFFEKYPTYCNDHIALLLKYNADVNIEDNQGNTPLSDAVECKCVEPLAIMLKHNSTSINKKYDEGETLLHI
AVRNEIIAVIHLLIDYGADIDAKDDNGITPIDYAAKSGNADVFNFLTEQLVPWY

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 18 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI52426735, Length=208, Percent_Identity=31.25, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI52426737, Length=208, Percent_Identity=31.25, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI188595682, Length=208, Percent_Identity=31.25, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI62988328, Length=173, Percent_Identity=31.7919075144509, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI62177127, Length=239, Percent_Identity=30.1255230125523, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI32967601, Length=208, Percent_Identity=28.8461538461538, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI268607595, Length=173, Percent_Identity=31.7919075144509, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI224809478, Length=205, Percent_Identity=26.8292682926829, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI224809474, Length=205, Percent_Identity=26.8292682926829, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI224809476, Length=205, Percent_Identity=26.8292682926829, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI224809472, Length=205, Percent_Identity=26.8292682926829, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI224809470, Length=205, Percent_Identity=26.8292682926829, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI224809468, Length=205, Percent_Identity=26.8292682926829, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI70780357, Length=206, Percent_Identity=29.126213592233, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI70780353, Length=199, Percent_Identity=29.1457286432161, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI70780355, Length=199, Percent_Identity=29.1457286432161, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI70780359, Length=199, Percent_Identity=29.1457286432161, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI215598574, Length=199, Percent_Identity=29.1457286432161, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI24233530, Length=211, Percent_Identity=31.7535545023697, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI157743284, Length=211, Percent_Identity=30.3317535545024, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI89363047, Length=203, Percent_Identity=28.0788177339901, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI157739945, Length=169, Percent_Identity=33.1360946745562, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI68131557, Length=211, Percent_Identity=30.8056872037915, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI224465233, Length=199, Percent_Identity=31.6582914572864, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI116063534, Length=179, Percent_Identity=31.2849162011173, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI18252778, Length=199, Percent_Identity=27.1356783919598, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI30425444, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI116875852, Length=199, Percent_Identity=28.643216080402, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI110815813, Length=164, Percent_Identity=28.0487804878049, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI87239981, Length=165, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI30348954, Length=207, Percent_Identity=28.5024154589372, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI13376842, Length=160, Percent_Identity=32.5, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI255982572, Length=223, Percent_Identity=27.3542600896861, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI268607506, Length=227, Percent_Identity=28.1938325991189, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI16975496, Length=171, Percent_Identity=28.6549707602339, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI88953571, Length=151, Percent_Identity=31.1258278145695, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI90186267, Length=190, Percent_Identity=28.4210526315789, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI113413200, Length=151, Percent_Identity=31.1258278145695, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI153791352, Length=151, Percent_Identity=31.1258278145695, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI268607514, Length=227, Percent_Identity=28.1938325991189, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI225543463, Length=169, Percent_Identity=31.3609467455621, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI225543461, Length=169, Percent_Identity=31.3609467455621, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI7705831, Length=192, Percent_Identity=28.125, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI268607512, Length=227, Percent_Identity=28.1938325991189, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI219842212, Length=239, Percent_Identity=29.2887029288703, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI4505317, Length=239, Percent_Identity=29.2887029288703, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI37620163, Length=220, Percent_Identity=28.1818181818182, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI134133226, Length=151, Percent_Identity=30.4635761589404, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI46519147, Length=220, Percent_Identity=28.1818181818182, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI34304381, Length=229, Percent_Identity=27.5109170305677, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71981389, Length=207, Percent_Identity=28.0193236714976, Blast_Score=83, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17542700, Length=207, Percent_Identity=28.0193236714976, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25145251, Length=207, Percent_Identity=28.0193236714976, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71981411, Length=207, Percent_Identity=28.0193236714976, Blast_Score=81, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71981414, Length=207, Percent_Identity=28.0193236714976, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71985677, Length=199, Percent_Identity=25.6281407035176, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI212645194, Length=200, Percent_Identity=27.5, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI281359521, Length=206, Percent_Identity=30.5825242718447, Blast_Score=80, Evalue=7e-16,
Organism=Drosophila melanogaster, GI281359519, Length=206, Percent_Identity=30.5825242718447, Blast_Score=80, Evalue=7e-16,
Organism=Drosophila melanogaster, GI28558752, Length=206, Percent_Identity=30.5825242718447, Blast_Score=80, Evalue=7e-16,
Organism=Drosophila melanogaster, GI28558750, Length=206, Percent_Identity=30.5825242718447, Blast_Score=80, Evalue=7e-16,
Organism=Drosophila melanogaster, GI28558756, Length=206, Percent_Identity=30.5825242718447, Blast_Score=80, Evalue=7e-16,
Organism=Drosophila melanogaster, GI28558754, Length=206, Percent_Identity=30.5825242718447, Blast_Score=80, Evalue=7e-16,
Organism=Drosophila melanogaster, GI161082089, Length=200, Percent_Identity=30.5, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI161082085, Length=200, Percent_Identity=30.5, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI161082099, Length=200, Percent_Identity=30.5, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI161082110, Length=200, Percent_Identity=30.5, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI161082092, Length=200, Percent_Identity=27.5, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI161082096, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI161082081, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI161082106, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24639454, Length=148, Percent_Identity=33.7837837837838, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281364453, Length=185, Percent_Identity=28.6486486486486, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581842, Length=185, Percent_Identity=28.6486486486486, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI45552223, Length=201, Percent_Identity=27.8606965174129, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI221472807, Length=201, Percent_Identity=27.8606965174129, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI17998549, Length=199, Percent_Identity=28.1407035175879, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21356741, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI281362676, Length=218, Percent_Identity=28.8990825688073, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24650843, Length=227, Percent_Identity=25.9911894273128, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI20129611, Length=207, Percent_Identity=28.0193236714976, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221330243, Length=184, Percent_Identity=28.804347826087, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24654624, Length=193, Percent_Identity=27.4611398963731, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45551135, Length=164, Percent_Identity=31.0975609756098, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI281363919, Length=164, Percent_Identity=31.0975609756098, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45550629, Length=177, Percent_Identity=29.3785310734463, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221330476, Length=164, Percent_Identity=31.0975609756098, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28573593, Length=164, Percent_Identity=31.0975609756098, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45550479, Length=164, Percent_Identity=31.0975609756098, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221330480, Length=164, Percent_Identity=31.0975609756098, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221330478, Length=164, Percent_Identity=31.0975609756098, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI221330482, Length=164, Percent_Identity=31.0975609756098, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI221330474, Length=164, Percent_Identity=31.0975609756098, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683
- InterPro:   IPR007685 [H]

Pfam domain/function: PF00023 Ank; PF04607 RelA_SpoT [H]

EC number: NA

Molecular weight: Translated: 23902; Mature: 23902

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MILKSKTKYTLHSAIQDGDIKKVKQLINKDITLVNSKYKDGTTALSVALKYKNLPIAEIL
CCCCCCCCHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEECCCCHHHHH
LSNGANVNAQDNDGHTALHLVVETIQVYYDFFEKYPTYCNDHIALLLKYNADVNIEDNQG
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEECCCC
NTPLSDAVECKCVEPLAIMLKHNSTSINKKYDEGETLLHIAVRNEIIAVIHLLIDYGADI
CCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCC
DAKDDNGITPIDYAAKSGNADVFNFLTEQLVPWY
CCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MILKSKTKYTLHSAIQDGDIKKVKQLINKDITLVNSKYKDGTTALSVALKYKNLPIAEIL
CCCCCCCCHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEECCCCHHHHH
LSNGANVNAQDNDGHTALHLVVETIQVYYDFFEKYPTYCNDHIALLLKYNADVNIEDNQG
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEECCCC
NTPLSDAVECKCVEPLAIMLKHNSTSINKKYDEGETLLHIAVRNEIIAVIHLLIDYGADI
CCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCC
DAKDDNGITPIDYAAKSGNADVFNFLTEQLVPWY
CCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA