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The map label for this gene is ykfC [H]

Identifier: 189183578

GI number: 189183578

Start: 698666

End: 699649

Strand: Direct

Name: ykfC [H]

Synonym: OTT_0671

Alternate gene names: 189183578

Gene position: 698666-699649 (Clockwise)

Preceding gene: 189183575

Following gene: 189183580

Centisome position: 34.78

GC content: 33.23

Gene sequence:

>984_bases
ATGGCTGTACACAGCATAGACAGAAATACATGGTTAACGAAACTTGAGCGTATAAAGTTGCTATCATCGAAAAATCAAGA
CATAAAGTTTAATAATCTTGGACATATTATCGATTTAAAGATGTTAGAAGAACAATATAAGGAACTCGATAGCAAGAAAG
CTATAGGAATAGATGGTATAACCAAAGAGGATTATGGTAAGAAATTGAAAGCAAATCTGCTCTCGCTTCTTACAAGAATT
CGCAAAGGGCAATATCAAGCTAAACCTGCACGAATAGTGAAAATTCCAAAAGAAGATGGAGGCAAAAGACCTTTGGTAAT
ATCATGCTTTGAAGATAAGATAATCGAGTCTACAGTAAGCAAGATACTAAACTCTGTGTTTGAGCCAATATTCTTAAAGT
ATTCATATGGATTTCATCCTAAGTTAAATGCACACGATGCGTTAAGGAAGTTAAATAGACTTACGTATAACTTCAATAAA
GGGGCTATAGTAGAGATTGATATAACAAAGTGTTTCAATACAATCAAGCATTGTGAGTTGATGGAATTTCTAAGAAAGAG
AATATCTGACAAGAAATTTCTAAGACTAGTTATGAAACTGATTGAAACACCAATCATAGAAAATGATACTATAGTTACTA
ACAAAGAAGGTTGTCGTCAAGGCTCAATAGTTTCGCCGATTCTGGCAAATGTCTTTCTGCATTATGTTATAGATAGTTGG
TTTGCAAAAATCAGCGAAGAAAACTTAATTGGACAAACAGGAATGGTAAGGTACTGCGACGATATGGTATTTGTCTTTGA
AAGTGAAGCAGATGCGAAAAGGTTTTATGATGTTTTGCCTAAAAGGTTAAATAAGTATGGGCTAAATATCAATGAAGCTA
AATCACAAATGATAAAATCTGGTAGAGACCATGCTGCAAATTTAGCCAAACAAGGCAAAAAGATCGCAAGTTATAATTTT
CTTGTCCTTATTTTCCATATTTAA

Upstream 100 bases:

>100_bases
ATGGTGTAAGGATGGCTGAGTTAACCATAGTAGTGATGAAACCAAGTAATGTTGGTAGAGCGAAGGGTTAGCAGAAAAGT
AAGAATGCAAGAGGGAAACA

Downstream 100 bases:

>100_bases
ATCTGATAGAAAAGTTTTGGGCTAATATGAAGAGGTGGATTAGACATCAAATTACTCAATTTGGTGGTAAATCTTATGAT
GCTATTGTCGATTTTTTCTA

Product: reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGITKEDYGKKLKANLLSLLTRI
RKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVSKILNSVFEPIFLKYSYGFHPKLNAHDALRKLNRLTYNFNK
GAIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
FAKISEENLIGQTGMVRYCDDMVFVFESEADAKRFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNF
LVLIFHI

Sequences:

>Translated_327_residues
MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGITKEDYGKKLKANLLSLLTRI
RKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVSKILNSVFEPIFLKYSYGFHPKLNAHDALRKLNRLTYNFNK
GAIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
FAKISEENLIGQTGMVRYCDDMVFVFESEADAKRFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNF
LVLIFHI
>Mature_326_residues
AVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGITKEDYGKKLKANLLSLLTRIR
KGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVSKILNSVFEPIFLKYSYGFHPKLNAHDALRKLNRLTYNFNKG
AIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANVFLHYVIDSWF
AKISEENLIGQTGMVRYCDDMVFVFESEADAKRFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNFL
VLIFHI

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=306, Percent_Identity=28.4313725490196, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6226521, Length=206, Percent_Identity=33.495145631068, Blast_Score=103, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 37691; Mature: 37559

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGI
CCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
TKEDYGKKLKANLLSLLTRIRKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHH
KILNSVFEPIFLKYSYGFHPKLNAHDALRKLNRLTYNFNKGAIVEIDITKCFNTIKHCEL
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEHHHHHHHHHHHHH
MEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
HHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
FAKISEENLIGQTGMVRYCDDMVFVFESEADAKRFYDVLPKRLNKYGLNINEAKSQMIKS
HHHHCCCCCCCCCCHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GRDHAANLAKQGKKIASYNFLVLIFHI
CCHHHHHHHHCCCCEECCCEEEEEEEC
>Mature Secondary Structure 
AVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGI
CCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
TKEDYGKKLKANLLSLLTRIRKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHH
KILNSVFEPIFLKYSYGFHPKLNAHDALRKLNRLTYNFNKGAIVEIDITKCFNTIKHCEL
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEHHHHHHHHHHHHH
MEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
HHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
FAKISEENLIGQTGMVRYCDDMVFVFESEADAKRFYDVLPKRLNKYGLNINEAKSQMIKS
HHHHCCCCCCCCCCHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GRDHAANLAKQGKKIASYNFLVLIFHI
CCHHHHHHHHCCCCEECCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]