Click here to switch to the map view.

The map label for this gene is yifB [H]

Identifier: 189183512

GI number: 189183512

Start: 625825

End: 627336

Strand: Direct

Name: yifB [H]

Synonym: OTT_0605

Alternate gene names: 189183512

Gene position: 625825-627336 (Clockwise)

Preceding gene: 189183511

Following gene: 189183513

Centisome position: 31.15

GC content: 34.52

Gene sequence:

>1512_bases
ATGGTAACACGAATTTCAAGTGTGACATGGAGTGGTATTAATGTGCTTGATGTTGACATACAAGTAAAAATTTCTACTGG
AATACCATGTTTTACAATAGTAGGTTTGGCAGACAAGACTGTTACAGAAGCAAGAGAAAGGGTAAAAGCTGCTTTATCTT
CCATTGGGTTAGCGTTACCTGCCAAGAAAATATTAGTTAATTTAGCTCCAGCTGATTTAGTTAAGGAAGGAAGTCATTTT
GACTTAGCTATCGCATGTGCAATATTAACTAGTATGAATATTTTGCATTGTAACGAAATGGCAGAATATCTTATTCTAGG
TGAGTTATCATTAGATGGAGCATTATTACCTGTAGCTGGAGTTTTGCCTGCGGCTATTGGAGCTGTGGAAAGAGACAAAG
GAATTATCTGTCCTGCAGCTAATGGTAAGGAAGCTGCATGGTCTGGCAATAAAAAAATAGTTACTCCAATAGATTTATTA
TCATTAGTTAATCATTTTAAAGGTACTCAAGTAATACGGCAGCCAGAAGTTGATATTAGTTCTGTAAAAGCTAATTATCC
TGATTTAAAAGATATTGTTGGACAAGCTATACCTAAAAGAGCTTTAGAGATTGCTGCCGCTGGTAGGCATCATATGTTAA
TGTCAGGTCCACCAGGTACTGGCAAGTCAATGTTAGCTGAAAGATTGCCTGGTATACTACCTGAAATGGCACCAATAGAA
ATTTTAGAGTGCAGTATGATAGCTAGCGTTGCTAATCTTATTAAGGAAGGTAACTTAATTCAACATAGACCATTTAGATC
ACCTCATCATACTTGTTCTATTGCTGCTATGGTTGGAGGAGGAGTTGGAAAACGAGTTAAACCAGGAGAAATTTCTTTAG
CTCATAATGGAATACTATTTCTAGATGAACTACCTGAATTTTCAACTAATACTATTGAAGCTTTGCGTCAACCTTTAGAA
TCAGCTGAAGTGCATATTTCTCGTGTTAACTTCAGTGTAAAATATCCTGCTAGGTTTCAGTTAATTGCAGCTATGAATCC
ATGCAAATGCGGATATTTATCTGATGCTGCTAAAGCTTGTAATAAAGCTCCAAGATGTGGAATTGACTATCAAATGAGAA
TTTCTGGTCCTATGAGAGATCGTTTTGATATTTATGTTGAAGTAGCAGAAGTTACATATAATATGGATGATAAATGTTCA
ATATCTGAGTCTTCAACTGAAGTCTTAAAACGAGTTAACAATGCTCATACAATACAACTTACCAGGTATGATGGATATGG
TATAAGCACAAATAGTCAGTTATTTGGTCAGTTATTAACAGATTTTGCTTCTCCGACTAATGAAGGACAGAAGTTATTAA
ATGATGCTGCTATAAAATTTAAGTTGTCTATGCGAGGATATAATAAAGTATTAAAAGTTGCACGTACAATAGCAGATTTA
GAAAATATTAAAATGGTAAATAAGTTTCATATAGCTGAGGCTTTAAGTTATAGACAACTAAATTTAAATTAG

Upstream 100 bases:

>100_bases
AAGACTAGTTATGAAACTGATTGTAATAATAGAATTATGTTACTATGCTGTGCTAGTATTACAAGATGTGTGATTAAAAT
AACTAACTTTGATCAGTAAT

Downstream 100 bases:

>100_bases
GTACGCAGATACGATATTGTAAATTGAAAAATGTTGATCTTGCTACAATAAAATAGAAATAGAGAATTAGGAGAATAAAT
CAAAAAAGGTGGTAAGGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MVTRISSVTWSGINVLDVDIQVKISTGIPCFTIVGLADKTVTEARERVKAALSSIGLALPAKKILVNLAPADLVKEGSHF
DLAIACAILTSMNILHCNEMAEYLILGELSLDGALLPVAGVLPAAIGAVERDKGIICPAANGKEAAWSGNKKIVTPIDLL
SLVNHFKGTQVIRQPEVDISSVKANYPDLKDIVGQAIPKRALEIAAAGRHHMLMSGPPGTGKSMLAERLPGILPEMAPIE
ILECSMIASVANLIKEGNLIQHRPFRSPHHTCSIAAMVGGGVGKRVKPGEISLAHNGILFLDELPEFSTNTIEALRQPLE
SAEVHISRVNFSVKYPARFQLIAAMNPCKCGYLSDAAKACNKAPRCGIDYQMRISGPMRDRFDIYVEVAEVTYNMDDKCS
ISESSTEVLKRVNNAHTIQLTRYDGYGISTNSQLFGQLLTDFASPTNEGQKLLNDAAIKFKLSMRGYNKVLKVARTIADL
ENIKMVNKFHIAEALSYRQLNLN

Sequences:

>Translated_503_residues
MVTRISSVTWSGINVLDVDIQVKISTGIPCFTIVGLADKTVTEARERVKAALSSIGLALPAKKILVNLAPADLVKEGSHF
DLAIACAILTSMNILHCNEMAEYLILGELSLDGALLPVAGVLPAAIGAVERDKGIICPAANGKEAAWSGNKKIVTPIDLL
SLVNHFKGTQVIRQPEVDISSVKANYPDLKDIVGQAIPKRALEIAAAGRHHMLMSGPPGTGKSMLAERLPGILPEMAPIE
ILECSMIASVANLIKEGNLIQHRPFRSPHHTCSIAAMVGGGVGKRVKPGEISLAHNGILFLDELPEFSTNTIEALRQPLE
SAEVHISRVNFSVKYPARFQLIAAMNPCKCGYLSDAAKACNKAPRCGIDYQMRISGPMRDRFDIYVEVAEVTYNMDDKCS
ISESSTEVLKRVNNAHTIQLTRYDGYGISTNSQLFGQLLTDFASPTNEGQKLLNDAAIKFKLSMRGYNKVLKVARTIADL
ENIKMVNKFHIAEALSYRQLNLN
>Mature_503_residues
MVTRISSVTWSGINVLDVDIQVKISTGIPCFTIVGLADKTVTEARERVKAALSSIGLALPAKKILVNLAPADLVKEGSHF
DLAIACAILTSMNILHCNEMAEYLILGELSLDGALLPVAGVLPAAIGAVERDKGIICPAANGKEAAWSGNKKIVTPIDLL
SLVNHFKGTQVIRQPEVDISSVKANYPDLKDIVGQAIPKRALEIAAAGRHHMLMSGPPGTGKSMLAERLPGILPEMAPIE
ILECSMIASVANLIKEGNLIQHRPFRSPHHTCSIAAMVGGGVGKRVKPGEISLAHNGILFLDELPEFSTNTIEALRQPLE
SAEVHISRVNFSVKYPARFQLIAAMNPCKCGYLSDAAKACNKAPRCGIDYQMRISGPMRDRFDIYVEVAEVTYNMDDKCS
ISESSTEVLKRVNNAHTIQLTRYDGYGISTNSQLFGQLLTDFASPTNEGQKLLNDAAIKFKLSMRGYNKVLKVARTIADL
ENIKMVNKFHIAEALSYRQLNLN

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=491, Percent_Identity=41.1405295315682, Blast_Score=367, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 54548; Mature: 54548

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50051 MCM_2 ; PS00676 SIGMA54_INTERACT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTRISSVTWSGINVLDVDIQVKISTGIPCFTIVGLADKTVTEARERVKAALSSIGLALP
CCEEECCCEECCCEEEEEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCC
AKKILVNLAPADLVKEGSHFDLAIACAILTSMNILHCNEMAEYLILGELSLDGALLPVAG
HHHHHEECCCHHHHCCCCCCHHHHHHHHHHHCCCEEHHHHHHEEEEEEECCCCCHHHHHH
VLPAAIGAVERDKGIICPAANGKEAAWSGNKKIVTPIDLLSLVNHFKGTQVIRQPEVDIS
HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCEEECCCCCHH
SVKANYPDLKDIVGQAIPKRALEIAAAGRHHMLMSGPPGTGKSMLAERLPGILPEMAPIE
HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCHH
ILECSMIASVANLIKEGNLIQHRPFRSPHHTCSIAAMVGGGVGKRVKPGEISLAHNGILF
HHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEE
LDELPEFSTNTIEALRQPLESAEVHISRVNFSVKYPARFQLIAAMNPCKCGYLSDAAKAC
EECCCCCCHHHHHHHHHHHHHHCEEEEEEEEEEECCCEEEEEEECCCCCCCCCHHHHHHH
NKAPRCGIDYQMRISGPMRDRFDIYVEVAEVTYNMDDKCSISESSTEVLKRVNNAHTIQL
CCCCCCCCCEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEE
TRYDGYGISTNSQLFGQLLTDFASPTNEGQKLLNDAAIKFKLSMRGYNKVLKVARTIADL
EEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHH
ENIKMVNKFHIAEALSYRQLNLN
HHHHHHHHHHHHHHHHHHEECCC
>Mature Secondary Structure
MVTRISSVTWSGINVLDVDIQVKISTGIPCFTIVGLADKTVTEARERVKAALSSIGLALP
CCEEECCCEECCCEEEEEEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCC
AKKILVNLAPADLVKEGSHFDLAIACAILTSMNILHCNEMAEYLILGELSLDGALLPVAG
HHHHHEECCCHHHHCCCCCCHHHHHHHHHHHCCCEEHHHHHHEEEEEEECCCCCHHHHHH
VLPAAIGAVERDKGIICPAANGKEAAWSGNKKIVTPIDLLSLVNHFKGTQVIRQPEVDIS
HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCEEECCCCCHH
SVKANYPDLKDIVGQAIPKRALEIAAAGRHHMLMSGPPGTGKSMLAERLPGILPEMAPIE
HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCHH
ILECSMIASVANLIKEGNLIQHRPFRSPHHTCSIAAMVGGGVGKRVKPGEISLAHNGILF
HHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCEEE
LDELPEFSTNTIEALRQPLESAEVHISRVNFSVKYPARFQLIAAMNPCKCGYLSDAAKAC
EECCCCCCHHHHHHHHHHHHHHCEEEEEEEEEEECCCEEEEEEECCCCCCCCCHHHHHHH
NKAPRCGIDYQMRISGPMRDRFDIYVEVAEVTYNMDDKCSISESSTEVLKRVNNAHTIQL
CCCCCCCCCEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEE
TRYDGYGISTNSQLFGQLLTDFASPTNEGQKLLNDAAIKFKLSMRGYNKVLKVARTIADL
EEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHH
ENIKMVNKFHIAEALSYRQLNLN
HHHHHHHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]