| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183472
Identifier: 189183472
GI number: 189183472
Start: 580142
End: 580534
Strand: Direct
Name: 189183472
Synonym: OTT_0565
Alternate gene names: NA
Gene position: 580142-580534 (Clockwise)
Preceding gene: 189183469
Following gene: 189183473
Centisome position: 28.88
GC content: 28.24
Gene sequence:
>393_bases ATGTCAGTTAAAATTACTAAAGGCAATAAAAGCGACCTATCTGTATCTTCGTTTTTTTCTAAAGGCTTATCTGGTAAATT GTTTAGTGATAAAGCTTACATATCTAAAAAGTTATTTCATCAACTGCTGACCAATTGTCTACGTTTATTTACTAATCTTC GTAAAGATATAAAAACATATTTATTGGACATACAAGATAATAGGTTATTAAATAAACGTTCTTTAATTGAGTCTGTCTTT AATGTAGTAAAAAAACATATGCATTTAGAGCATACTAGACACCGTTCTCCTCTTAATTTCTTTGTTCATATAATTGCTTC TCTTGCTAGTTATTCTATCTCTAAACTTAATCCCTATCTTATCTCTTCTTCTTATCATGGATCTTTATCCTAA
Upstream 100 bases:
>100_bases GACCTAATCATTTTACTTCTATTTTGATATTTATCAGCAATAATTTTGAACTACGTCAACCAGTTTCGAAAGAGATCTAA TCAATAATAAAGGCGAAATA
Downstream 100 bases:
>100_bases ATTGACGTTATAAAGCTGTTAAATGGGTAGAAGATACCATAAACACCCAAACTTTGCTCTTCTAGATCGTAAAGCTCTAA TGAAGAATGATATGAATTAT
Product: transposase
Products: NA
Alternate protein names: Transposase IS4 Family Protein; ISPg3 Transposase; Transposase IS4 Family; Transposase And Inactivated Derivative; IS4 Family Transposase; Membrane-Associated Metal-Dependent Hydrolase
Number of amino acids: Translated: 130; Mature: 129
Protein sequence:
>130_residues MSVKITKGNKSDLSVSSFFSKGLSGKLFSDKAYISKKLFHQLLTNCLRLFTNLRKDIKTYLLDIQDNRLLNKRSLIESVF NVVKKHMHLEHTRHRSPLNFFVHIIASLASYSISKLNPYLISSSYHGSLS
Sequences:
>Translated_130_residues MSVKITKGNKSDLSVSSFFSKGLSGKLFSDKAYISKKLFHQLLTNCLRLFTNLRKDIKTYLLDIQDNRLLNKRSLIESVF NVVKKHMHLEHTRHRSPLNFFVHIIASLASYSISKLNPYLISSSYHGSLS >Mature_129_residues SVKITKGNKSDLSVSSFFSKGLSGKLFSDKAYISKKLFHQLLTNCLRLFTNLRKDIKTYLLDIQDNRLLNKRSLIESVFN VVKKHMHLEHTRHRSPLNFFVHIIASLASYSISKLNPYLISSSYHGSLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14918; Mature: 14786
Theoretical pI: Translated: 10.77; Mature: 10.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVKITKGNKSDLSVSSFFSKGLSGKLFSDKAYISKKLFHQLLTNCLRLFTNLRKDIKTY CCEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLDIQDNRLLNKRSLIESVFNVVKKHMHLEHTRHRSPLNFFVHIIASLASYSISKLNPYL HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH ISSSYHGSLS CCCCCCCCCC >Mature Secondary Structure SVKITKGNKSDLSVSSFFSKGLSGKLFSDKAYISKKLFHQLLTNCLRLFTNLRKDIKTY CEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLDIQDNRLLNKRSLIESVFNVVKKHMHLEHTRHRSPLNFFVHIIASLASYSISKLNPYL HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH ISSSYHGSLS CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA