Definition Orientia tsutsugamushi str. Ikeda, complete genome.
Accession NC_010793
Length 2,008,987

Click here to switch to the map view.

The map label for this gene is 189183469

Identifier: 189183469

GI number: 189183469

Start: 576004

End: 576777

Strand: Direct

Name: 189183469

Synonym: OTT_0562

Alternate gene names: NA

Gene position: 576004-576777 (Clockwise)

Preceding gene: 189183468

Following gene: 189183472

Centisome position: 28.67

GC content: 30.49

Gene sequence:

>774_bases
ATGGTAGATTTTATCTTTCAAAACAAATGTCAAATTGATGGGATGGATCCATTTAAATGGGCTTTAGACAATAATTATTG
CATTAATGGTAAAAATCCAATTGAATACGCTGTTCATAAGAATTTTTTAATTGATAAAATGAACCCAATAATATGGGCTC
AACAAAATAATATCACTAAAATACACGGCATTGATTTAGTATTATCAATAGTAAGGTCTGGATACGAAATAGAAGGAAAA
GATGCTGTACTTTGGTGTATAGATAATAAAGTAAAAATTAATGGTCAAGAATCATCAGAGTTCGCTTTAGCTAATGGTTA
TATTATGGTAGATAAATCATATGTAAAAATAGAGAATGATGTTATAAAGCATGCATTAAAACATGGCTATAAAATTAAAG
GTCAAGATATTAGTGAGCATATTGATTTCGAACGAGATACAGATATTATTTATGATTTACAAAAGAATGGTTTTAAGATA
TCAGGGAAATCTCCTGTTGAGTTTTGTATAGCTAAAGGAATGCATATTTGTAGGACAGATCCTGTAGACTTTGCGGTACA
GAATAATTATCAAATTGAAGGGAAGAATCCGTTAGCATGGGCTATAAACAATAATTATCAAATAGCAACAATTTTTGGAC
ACATATCTCCAATGGAATATGCAGTACGAAACAAAGTTCAAATTCCACTTGAGCAGTTAGGATGCGTACCTGATAATGCT
CAACTCAAGACAGGTATTCAGGAAAAGCATTTGAAAACTTATCGTACAAAGTAA

Upstream 100 bases:

>100_bases
AGATCTGGGGCTTATTTTAAAAGCAGATATATCAAAGTTAGAAAAAGATAGTGGTTGGCTATTTAATCAGCTTCAGAGCT
TTGATCGGAAAAAATACAGT

Downstream 100 bases:

>100_bases
TATAGGTTACCCTATTAACGGCAGATTAGGATAAGTTAACTGAAGAAAAAGAAGAGAGAATAAGATAGGAATTAAGTTTG
GAGATAGAATAAGTTGCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MVDFIFQNKCQIDGMDPFKWALDNNYCINGKNPIEYAVHKNFLIDKMNPIIWAQQNNITKIHGIDLVLSIVRSGYEIEGK
DAVLWCIDNKVKINGQESSEFALANGYIMVDKSYVKIENDVIKHALKHGYKIKGQDISEHIDFERDTDIIYDLQKNGFKI
SGKSPVEFCIAKGMHICRTDPVDFAVQNNYQIEGKNPLAWAINNNYQIATIFGHISPMEYAVRNKVQIPLEQLGCVPDNA
QLKTGIQEKHLKTYRTK

Sequences:

>Translated_257_residues
MVDFIFQNKCQIDGMDPFKWALDNNYCINGKNPIEYAVHKNFLIDKMNPIIWAQQNNITKIHGIDLVLSIVRSGYEIEGK
DAVLWCIDNKVKINGQESSEFALANGYIMVDKSYVKIENDVIKHALKHGYKIKGQDISEHIDFERDTDIIYDLQKNGFKI
SGKSPVEFCIAKGMHICRTDPVDFAVQNNYQIEGKNPLAWAINNNYQIATIFGHISPMEYAVRNKVQIPLEQLGCVPDNA
QLKTGIQEKHLKTYRTK
>Mature_257_residues
MVDFIFQNKCQIDGMDPFKWALDNNYCINGKNPIEYAVHKNFLIDKMNPIIWAQQNNITKIHGIDLVLSIVRSGYEIEGK
DAVLWCIDNKVKINGQESSEFALANGYIMVDKSYVKIENDVIKHALKHGYKIKGQDISEHIDFERDTDIIYDLQKNGFKI
SGKSPVEFCIAKGMHICRTDPVDFAVQNNYQIEGKNPLAWAINNNYQIATIFGHISPMEYAVRNKVQIPLEQLGCVPDNA
QLKTGIQEKHLKTYRTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29425; Mature: 29425

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDFIFQNKCQIDGMDPFKWALDNNYCINGKNPIEYAVHKNFLIDKMNPIIWAQQNNITK
CCCEEECCCCCCCCCCCEEEECCCCEEECCCCCEEEEEECCEEEECCCCEEEEECCCCEE
IHGIDLVLSIVRSGYEIEGKDAVLWCIDNKVKINGQESSEFALANGYIMVDKSYVKIEND
EHHHHHHHHHHHCCCEECCCCEEEEEECCEEEECCCCCCCEEEECCEEEEECCEEEEHHH
VIKHALKHGYKIKGQDISEHIDFERDTDIIYDLQKNGFKISGKSPVEFCIAKGMHICRTD
HHHHHHHCCEEECCCCHHHHCCCCCCCCEEEEECCCCEEECCCCHHHHHHHCCCEEEECC
PVDFAVQNNYQIEGKNPLAWAINNNYQIATIFGHISPMEYAVRNKVQIPLEQLGCVPDNA
CCCEEECCCEEECCCCCEEEEECCCEEEEEEEECCCCHHHHHHCCEECCHHHHCCCCCCC
QLKTGIQEKHLKTYRTK
HHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MVDFIFQNKCQIDGMDPFKWALDNNYCINGKNPIEYAVHKNFLIDKMNPIIWAQQNNITK
CCCEEECCCCCCCCCCCEEEECCCCEEECCCCCEEEEEECCEEEECCCCEEEEECCCCEE
IHGIDLVLSIVRSGYEIEGKDAVLWCIDNKVKINGQESSEFALANGYIMVDKSYVKIEND
EHHHHHHHHHHHCCCEECCCCEEEEEECCEEEECCCCCCCEEEECCEEEEECCEEEEHHH
VIKHALKHGYKIKGQDISEHIDFERDTDIIYDLQKNGFKISGKSPVEFCIAKGMHICRTD
HHHHHHHCCEEECCCCHHHHCCCCCCCCEEEEECCCCEEECCCCHHHHHHHCCCEEEECC
PVDFAVQNNYQIEGKNPLAWAINNNYQIATIFGHISPMEYAVRNKVQIPLEQLGCVPDNA
CCCEEECCCEEECCCCCEEEEECCCEEEEEEEECCCCHHHHHHCCEECCHHHHCCCCCCC
QLKTGIQEKHLKTYRTK
HHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA