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The map label for this gene is ydcH [H]

Identifier: 189183439

GI number: 189183439

Start: 554390

End: 554860

Strand: Direct

Name: ydcH [H]

Synonym: OTT_0532

Alternate gene names: 189183439

Gene position: 554390-554860 (Clockwise)

Preceding gene: 189183426

Following gene: 189183440

Centisome position: 27.6

GC content: 42.04

Gene sequence:

>471_bases
ATGTCAGATAACGCAACAAAAGACTATCCAATCCCTGTGCTAGAGGGCCCAAGTTTTACTTTTGCTCAGGCCTATTTTAC
GTGGAAGCGCATTACAGACAGGGCTCTGGATGCTGTTGGCTTGACGCATACACAATACGTCTTTATGGGGACACTGTTTG
AGCTAGAAAAGCATCAGGCCAAGGCTACACAAAATGATTTGGCGAGGCTTACCAATTCTGATGTCACCATGACATCGCAA
ATCCTTCGTACTCTACAAAAACGTGGGCTTGTTTTGCGCGAACAAATAGAAGGTGATGAGCGGGCAAAATATTCCAGCCT
ATCACCTGCCGGTAAAAAGCTCGTTAAAAAAGCTGCTGAAATTATGAAAACAAATGAGAAAGAGTATTTTGCTCCAGTAG
AAAAAGATATGGAGCAATTTTTAACTTACCTGAAGATCTTAACACGCGTCAAAGAGATTAATCTGCTATGA

Upstream 100 bases:

>100_bases
TATCTTGACATAAAACTATATTTTGTACAACTATAATATGTATAATCATGTTATGATTAAGCTCTTTTTTAAAAACAACA
CATTTTATGGAGAGAAATAC

Downstream 100 bases:

>100_bases
AAATCACTTTTGTTCCCTTAGATGAATCACATTTTCCGTTACTGCTAAAGTGGCTGGAGACGCCGCACGTCAAAAAATGG
TGGGATCAGTATGTGACGTA

Product: transcriptional regulator (MarR family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSDNATKDYPIPVLEGPSFTFAQAYFTWKRITDRALDAVGLTHTQYVFMGTLFELEKHQAKATQNDLARLTNSDVTMTSQ
ILRTLQKRGLVLREQIEGDERAKYSSLSPAGKKLVKKAAEIMKTNEKEYFAPVEKDMEQFLTYLKILTRVKEINLL

Sequences:

>Translated_156_residues
MSDNATKDYPIPVLEGPSFTFAQAYFTWKRITDRALDAVGLTHTQYVFMGTLFELEKHQAKATQNDLARLTNSDVTMTSQ
ILRTLQKRGLVLREQIEGDERAKYSSLSPAGKKLVKKAAEIMKTNEKEYFAPVEKDMEQFLTYLKILTRVKEINLL
>Mature_155_residues
SDNATKDYPIPVLEGPSFTFAQAYFTWKRITDRALDAVGLTHTQYVFMGTLFELEKHQAKATQNDLARLTNSDVTMTSQI
LRTLQKRGLVLREQIEGDERAKYSSLSPAGKKLVKKAAEIMKTNEKEYFAPVEKDMEQFLTYLKILTRVKEINLL

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17882; Mature: 17751

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNATKDYPIPVLEGPSFTFAQAYFTWKRITDRALDAVGLTHTQYVFMGTLFELEKHQA
CCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KATQNDLARLTNSDVTMTSQILRTLQKRGLVLREQIEGDERAKYSSLSPAGKKLVKKAAE
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCHHHHHHHHHHHH
IMKTNEKEYFAPVEKDMEQFLTYLKILTRVKEINLL
HHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDNATKDYPIPVLEGPSFTFAQAYFTWKRITDRALDAVGLTHTQYVFMGTLFELEKHQA
CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KATQNDLARLTNSDVTMTSQILRTLQKRGLVLREQIEGDERAKYSSLSPAGKKLVKKAAE
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCHHHHHHHHHHHH
IMKTNEKEYFAPVEKDMEQFLTYLKILTRVKEINLL
HHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]