Click here to switch to the map view.

The map label for this gene is 189183425

Identifier: 189183425

GI number: 189183425

Start: 543957

End: 544184

Strand: Direct

Name: 189183425

Synonym: OTT_0518

Alternate gene names: NA

Gene position: 543957-544184 (Clockwise)

Preceding gene: 189183424

Following gene: 189183426

Centisome position: 27.08

GC content: 31.58

Gene sequence:

>228_bases
TTGATACAAATCATAGAAAATGGCACTATAGTTACTAACAAAGAAGGTTGTAGTCAATGCTCAATTGTTGCACCAATCAT
AGCTAATGTCTTTCTGCACTATGTTATAGATATCTGGTTTACAAAAATTAGTAAAGAGAACTTAATTGAACAAACAGGAA
TGGTGAAGTATTGCGACGATATGGTATTTGTCTTTGAAAATGAAAGCAGATGCGAAAATGTTTTATGA

Upstream 100 bases:

>100_bases
ATAACAAAGTGTTTTAATACAATTAAGTATTGTGAGTTGATAGAATTTCTAAGAAATAGAATATCTGATAATAAATTTCT
AATACTAGTTATGAAACTGA

Downstream 100 bases:

>100_bases
TGTTTTGCATAAAATGTTAAATAAGTATGGGCTAAATATCAACGAAGCTAAATTATAAATGATAAAATCTTGTAACGCCA
GATTAGGATAAGTTGGAATA

Product: reverse transcriptase

Products: NA

Alternate protein names: RNA-Directed DNA Polymerase

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MIQIIENGTIVTNKEGCSQCSIVAPIIANVFLHYVIDIWFTKISKENLIEQTGMVKYCDDMVFVFENESRCENVL

Sequences:

>Translated_75_residues
MIQIIENGTIVTNKEGCSQCSIVAPIIANVFLHYVIDIWFTKISKENLIEQTGMVKYCDDMVFVFENESRCENVL
>Mature_75_residues
MIQIIENGTIVTNKEGCSQCSIVAPIIANVFLHYVIDIWFTKISKENLIEQTGMVKYCDDMVFVFENESRCENVL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8590; Mature: 8590

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
9.3 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
9.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQIIENGTIVTNKEGCSQCSIVAPIIANVFLHYVIDIWFTKISKENLIEQTGMVKYCDD
CEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEECCC
MVFVFENESRCENVL
EEEEEECCCCCCCCC
>Mature Secondary Structure
MIQIIENGTIVTNKEGCSQCSIVAPIIANVFLHYVIDIWFTKISKENLIEQTGMVKYCDD
CEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEECCC
MVFVFENESRCENVL
EEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA